Basic Information:

  VIRBase ID:  

HHID00073838

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3662:  MIMAT0018083          LIMD2:  NM_030576     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3662	LIMD2
miRBase Accession/Entrez ID	MIMAT0018083	80774
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3662	rs1269591251 chr6:134979367    C/T rs1392974872 chr6:134979361    T/C rs779534942 chr6:134979360    G/A rs748588809 chr6:134979372    C/A rs748588809 chr6:134979372    C/T rs763349803 chr6:134979371    TC/T

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LIMD2	chr17:61773277-61773278(-) m6A 3'UTR       27371828 chr17:61773338-61773339(-) m6A 3'UTR       25456834//27371828 chr17:61773351-61773352(-) m6A 3'UTR       25456834//27371828 chr17:61773421-61773422(-) m6A 3'UTR       24284625//25456834//27371828 chr17:61773466-61773467(-) m6A 3'UTR       24284625//25456834//27371828 chr17:61773514-61773515(-) m6A 3'UTR       24209618//25456834//27773535//27371828 chr17:61773520-61773521(-) m6A 3'UTR       24209618//25456834//27773535//27371828 chr17:61773674-61773675(-) m6A 3'UTR       27773535//27371828 chr17:61773714-61773715(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828 chr17:61773800-61773801(-) m6A 3'UTR       24209618//25456834//27773535//27371828 chr17:61773832-61773833(-) m6A 3'UTR       24209618//25456834//27773535//27371828 chr17:61773842-61773843(-) m6A 3'UTR       24209618//25456834//27773535//27371828 chr17:61773889-61773890(-) m6A 3'UTR       24209618//25456834//24981863//27371828 chr17:61773958-61773959(-) m6A 3'UTR       25456834//27371828 chr17:61773988-61773989(-) m6A 3'UTR       25456834//27371828 chr17:61774016-61774017(-) m6A 3'UTR       25456834//27371828 chr17:61774045-61774046(-) m6A 3'UTR       25456834//27371828 chr17:61774312-61774313(-) m6A 3'UTR       25456834//27371828 chr17:61774379-61774380(-) m6A 3'UTR       25456834//24981863//27371828 chr17:61774385-61774386(-) m6A 3'UTR       25456834//24981863//27371828 chr17:61774402-61774403(-) m6A 3'UTR       25456834//24981863//27371828 chr17:61774458-61774459(-) m6A 3'UTR       25456834//24981863//27371828//27773536 chr17:61774479-61774480(-) m6A 3'UTR       25456834//24981863//27371828//27773536 chr17:61774497-61774498(-) m6A 3'UTR       25456834//24981863//27371828 chr17:61774527-61774528(-) m6A 3'UTR       25456834//24981863//27371828 chr17:61774535-61774536(-) m6A 3'UTR       25456834//24981863//27371828 chr17:61774556-61774557(-) m6A 3'UTR       25456834//24981863//27371828 chr17:61775193-61775194(-) m6A 3'UTR//exon       28052920//27773535 chr17:61775328-61775329(-) m6A 3'UTR//exon       25456834//24981863//28052920//26404942//27773536 chr17:61775338-61775339(-) m6A 3'UTR//exon       25456834//24981863//28052920//26404942//27773536 chr17:61775474-61775475(-) m6A 3'UTR//exon       28052920 chr17:61775536-61775537(-) m6A 3'UTR//exon       28052920//27773536 chr17:61775644-61775645(-) m6A 3'UTR//exon       25456834//27773535//27773536 chr17:61775714-61775715(-) m6A 3'UTR//exon       25456834//27773536 chr17:61775758-61775759(-) m6A 3'UTR//exon//intron       25456834//24981863//27773536 chr17:61775782-61775783(-) m6A 3'UTR//exon//intron       25456834//24981863//27773536 chr17:61775933-61775934(-) m6A CDS//exon       25456834 chr17:61776246-61776247(-) m6A 5'UTR//CDS//exon//intron       27773536 chr17:61776267-61776268(-) m6A 5'UTR//CDS//exon//intron       27773536 chr17:61776582-61776583(-) m6A exon//intron       27773536 chr17:61776706-61776707(-) m6A 5'UTR//exon       25456834//27773536 chr17:61776838-61776839(-) m6A exon//intron       27773536 chr17:61776895-61776896(-) m6A exon//intron       27773536 chr17:61777351-61777352(-) m6A exon//intron       27371828//27773536 chr17:61777423-61777424(-) m6A 5'UTR//exon//intron       27371828//27773536 chr17:61777483-61777484(-) m6A 5'UTR//exon//intron       25456834//27371828 chr17:61777834-61777835(-) m6A 5'UTR//intron       25456834//27371828 chr17:61777927-61777928(-) m6A 5'UTR//intron       25456834//27371828 chr17:61778032-61778033(-) m6A 5'UTR//intron       27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3662	Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     - Mitochondrion Cell line (HEK-293|HeLa)     22984580
	LIMD2	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3662
Interactor2: LIMD2

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	CDS
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.