Detail Information

Basic Information:


  VIRBase ID:  

HHID00073329

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3614-5p:           SNRPD2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3614-5p SNRPD2
miRBase
Accession/Entrez ID		 MIMAT0017992 6633
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - Sm-D2//SMD2//SNRPD1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3614-5p
rs1276310586 chr17:56891320    G/A
rs1422621595 chr17:56891335    C/A
rs1422621595 chr17:56891335    C/G
rs533715139 chr17:56891339    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SNRPD2
chr19:46192172(-) A-I      intronic
chr19:46192171(-) A-I      intronic
chr19:46192167(-) A-I      intronic
chr19:46192216(-) A-I      intronic
chr19:46192887(-) A-I      intronic
chr19:46192088(-) A-I      intronic
chr19:46192212(-) A-I      intronic
chr19:46192028(-) A-I      intronic
chr19:46192076(-) A-I      intronic
chr19:46194003(-) A-I      intronic
chr19:46192219(-) A-I      intronic
chr19:46193847(-) A-I      intronic
chr19:46194543(-) A-I      intronic
chr19:46194007(-) A-I      intronic
chr19:46194446(-) A-I      intronic
chr19:46193924(-) A-I      intronic
chr19:46193845(-) A-I      intronic
chr19:46193187(-) A-I      intronic
chr19:46192883(-) A-I      intronic
chr19:46194486(-) A-I      intronic
chr19:46191417(-) A-I      intronic
chr19:46194661(-) A-I      intronic
chr19:46193212(-) A-I      intronic
chr19:46193833(-) A-I      intronic
chr19:46192721(-) A-I      intronic
chr19:46193121(-) A-I      intronic
chr19:46192760(-) A-I      intronic
chr19:46192907(-) A-I      intronic
chr19:46192115(-) A-I      intronic
chr19:46193676(-) A-I      intronic
chr19:46194456(-) A-I      intronic
chr19:46194896(-) A-I      intronic
chr19:46191261(-) A-I      intronic
chr19:46192682(-) A-I      intronic
chr19:46193249(-) A-I      intronic
chr19:46194423(-) A-I      intronic
chr19:46192667(-) A-I      intronic
chr19:46194435(-) A-I      intronic
chr19:46192763(-) A-I      intronic
chr19:46193035(-) A-I      intronic
chr19:46192681(-) A-I      intronic
chr19:46192197(-) A-I      intronic
chr19:46192129(-) A-I      intronic
chr19:46193864(-) A-I      intronic
chr19:46192964(-) A-I      intronic
chr19:46193195(-) A-I      intronic
chr19:46193248(-) A-I      intronic
chr19:46193268(-) A-I      intronic
chr19:46194526(-) A-I      intronic
chr19:46194038(-) A-I      intronic
chr19:46192102(-) A-I      intronic
chr19:46194556(-) A-I      intronic
chr19:46191391(-) A-I      intronic
chr19:46192266(-) A-I      intronic
chr19:46192106(-) A-I      intronic
chr19:46192683(-) A-I      intronic
chr19:46192708(-) A-I      intronic
chr19:46194553(-) A-I      intronic
chr19:46193741(-) A-I      intronic
chr19:46192696(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SNRPD2
chr19:46192675(-) A-I intron -    22327324
chr19:46194038(-) A-I intron -    22327324
chr19:46192123(-) A-G intron -    22484847
chr19:46192266(-) A-G intron -    22484847
chr19:46192675(-) A-G intron -    22484847
chr19:46192682(-) A-G intron -    22484847
chr19:46192696(-) A-G intron -    22484847
chr19:46192746(-) A-G intron -    22484847
chr19:46192757(-) A-G intron -    22484847
chr19:46193174(-) T-C intron -    22484847
chr19:46193212(-) A-G intron -    22484847
chr19:46193213(-) A-G intron -    22484847
chr19:46194008(-) A-G intron -    22484847
chr19:46194038(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SNRPD2
chr19:46190764-46190765(-) m6A 3'UTR       27773535
chr19:46190787-46190788(-) m6A 3'UTR       27773535
chr19:46190832-46190833(-) m6A 3'UTR//CDS       27773535
chr19:46190856-46190857(-) m6A 3'UTR//CDS       27773535
chr19:46190889-46190890(-) m6A 3'UTR//CDS       24981863//26404942//27773535//22575960
chr19:46190944-46190945(-) m6A 3'UTR//CDS       24981863//26404942//27773535//22575960
chr19:46191673-46191674(-) m6A 5'UTR//CDS       24981863//26404942//27773535//27371828//22575960
chr19:46191713-46191714(-) m6A 5'UTR//CDS       24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr19:46192516-46192517(-) m6A 5'UTR//intron       25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr19:46192533-46192534(-) m6A 5'UTR//intron       25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr19:46192568-46192569(-) m6A 5'UTR//intron       25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr19:46192583-46192584(-) m6A 5'UTR//intron       25456834//24981863//27773535//27371828//27773536//22608085
chr19:46193884-46193885(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr19:46194779-46194780(-) m6A 5'UTR//intron       27773535
chr19:46194822-46194823(-) m6A 5'UTR//intron       27773535
chr19:46194845-46194846(-) m6A 5'UTR//intron       27773535
chr19:46194860-46194861(-) m6A 5'UTR//intron       27773535
chr19:46194951-46194952(-) m6A 5'UTR//intron       24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3614-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
SNRPD2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3614-5p
Interactor2: SNRPD2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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