Detail Information

Basic Information:


  VIRBase ID:  

HHID00073323

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3614-5p:           KLF6:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3614-5p KLF6
miRBase
Accession/Entrez ID		 MIMAT0017992 1316
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - BCD1//CBA1//COPEB//CPBP//GBF//PAC1//ST12//ZF9

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3614-5p
rs1276310586 chr17:56891320    G/A
rs1422621595 chr17:56891335    C/A
rs1422621595 chr17:56891335    C/G
rs533715139 chr17:56891339    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KLF6
chr10:3826075(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED KLF6
chr10:3819138(-) C-A exon 3'UTR    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KLF6
chr10:3819658-3819659(-) m6A 3'UTR//intron       25456834
chr10:3819669-3819670(-) m6A 3'UTR//intron       25456834
chr10:3819682-3819683(-) m6A 3'UTR//intron       25456834
chr10:3819777-3819778(-) m6A 3'UTR//intron       24981863//26404942//22608085
chr10:3819831-3819832(-) m6A 3'UTR//intron       24981863//26404942//22608085
chr10:3819909-3819910(-) m6A 3'UTR//intron       26404942
chr10:3821110-3821111(-) m6A 3'UTR//intron       24981863//27773535
chr10:3821173-3821174(-) m6A 3'UTR//intron       24981863//27773535//27371828
chr10:3821180-3821181(-) m6A 3'UTR//intron       24981863//27773535//27371828
chr10:3821219-3821220(-) m6A 3'UTR//intron       24981863//27773535//27371828
chr10:3821225-3821226(-) m6A 3'UTR//intron       24981863//27773535//27371828
chr10:3821233-3821234(-) m6A 3'UTR//intron       24981863//27773535//27371828
chr10:3821368-3821369(-) m6A 3'UTR//exon//intron       24284625//27773535
chr10:3821519-3821520(-) m6A 3'UTR//exon//intron       24284625//24981863//26404942//27773535
chr10:3823566-3823567(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr10:3823574-3823575(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr10:3823595-3823596(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr10:3823606-3823607(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr10:3823646-3823647(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr10:3823651-3823652(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr10:3823725-3823726(-) m6A CDS//intron       24284625//24981863//27773535
chr10:3823973-3823974(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr10:3824037-3824038(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr10:3824049-3824050(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr10:3824154-3824155(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr10:3824194-3824195(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr10:3824207-3824208(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr10:3824245-3824246(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr10:3824274-3824275(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr10:3824315-3824316(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr10:3827151-3827152(-) m6A CDS//exon       27371828//27773536
chr10:3827277-3827278(-) m6A 5'UTR//exon       24981863//27371828//27773536
chr10:3827300-3827301(-) m6A 5'UTR//exon       24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3614-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
KLF6
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3614-5p
Interactor2: KLF6

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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