Detail Information

Basic Information:


  VIRBase ID:  

HHID00073169

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3613-5p:           SLC25A39:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3613-5p SLC25A39
miRBase
Accession/Entrez ID		 MIMAT0017990 51629
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CGI-69//CGI69

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3613-5p
rs1279899144 chr13:49996468    C/A
rs1327340301 chr13:49996476    A/G
rs1363404935 chr13:49996465    G/A
rs1438135163 chr13:49996469    A/C
rs201796222 chr13:49996468    CA/CAA
rs201796222 chr13:49996468    CA/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC25A39
chr17:42400419(-) A-I      intronic
chr17:42400388(-) A-I      intronic
chr17:42400412(-) A-I      intronic
chr17:42399517(-) A-I      intronic
chr17:42400484(-) A-I      intronic
chr17:42400509(-) A-I      intronic
chr17:42399509(-) A-I      intronic
chr17:42399535(-) A-I      intronic
chr17:42401148(-) A-I      intronic
chr17:42401081(-) A-I      intronic
chr17:42399615(-) A-I      intronic
chr17:42401138(-) A-I      intronic
chr17:42399357(-) A-I      intronic
chr17:42401174(-) A-I      intronic
chr17:42399492(-) A-I      intronic
chr17:42399505(-) A-I      intronic
chr17:42399400(-) A-I      intronic
chr17:42401120(-) A-I      intronic
chr17:42400563(-) A-I      intronic
chr17:42400380(-) A-I      intronic
chr17:42400473(-) A-I      intronic
chr17:42399451(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC25A39
chr17:42396999-42397000(-) m6A 3'UTR//exon       24284625//27773535
chr17:42397067-42397068(-) m6A 3'UTR//exon       24284625//27773535
chr17:42397133-42397134(-) m6A 3'UTR//exon       24284625//27773535//22575960
chr17:42397196-42397197(-) m6A 3'UTR//exon       24284625//27773535//22575960
chr17:42397309-42397310(-) m6A 3'UTR//exon       24284625//25456834//26404942//27773535//27773536//22575960
chr17:42397348-42397349(-) m6A 3'UTR//exon       24284625//25456834//26404942//27773536//22575960
chr17:42397387-42397388(-) m6A 3'UTR//CDS//exon       24284625//25456834//26404942//27773536//22575960
chr17:42397393-42397394(-) m6A 3'UTR//CDS//exon       24284625//25456834//26404942//27773536//22575960
chr17:42397573-42397574(-) m6A 3'UTR//CDS//exon       24284625//27773536//22575960
chr17:42397625-42397626(-) m6A 3'UTR//CDS//exon       24284625//27773536//22575960
chr17:42397640-42397641(-) m6A 3'UTR//CDS//exon       24284625//27773536//22575960
chr17:42397693-42397694(-) m6A exon//intron       27773535//22575960
chr17:42397764-42397765(-) m6A 3'UTR//CDS//exon       22575960
chr17:42398033-42398034(-) m6A 3'UTR//CDS//exon       22575960
chr17:42398038-42398039(-) m6A 3'UTR//CDS//exon       22575960
chr17:42398503-42398504(-) m6A CDS//exon//intron       24284625//22575960
chr17:42398557-42398558(-) m6A CDS//exon//intron       24284625//22575960
chr17:42398645-42398646(-) m6A exon//intron       24284625//22575960
chr17:42398671-42398672(-) m6A 3'UTR//exon//intron       24284625
chr17:42398678-42398679(-) m6A 3'UTR//exon//intron       24284625
chr17:42398749-42398750(-) m6A CDS//exon//intron       24284625
chr17:42399095-42399096(-) m6A 5'UTR//CDS//exon       24284625//27773535//22575960
chr17:42400916-42400917(-) m6A CDS//exon//intron       24284625//27773536//22575960
chr17:42400943-42400944(-) m6A 5'UTR//exon//intron       24284625//27773536//22575960
chr17:42401020-42401021(-) m6A 5'UTR//exon//intron       27773536
chr17:42401398-42401399(-) m6A exon//intron       22575960
chr17:42401471-42401472(-) m6A exon//intron       24209618//25456834//22575960
chr17:42401526-42401527(-) m6A 5'UTR//intron       24284625//24209618//25456834//22575960
chr17:42401552-42401553(-) m6A 5'UTR//intron       24284625//25456834//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3613-5p
Exosome Pooled sera     27278097
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
SLC25A39
Chromatin K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3613-5p
Interactor2: SLC25A39

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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