Basic Information:

  VIRBase ID:  

HHID00073054

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3609:  MIMAT0017986          QTRT2:  NM_024638     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3609	QTRT2
miRBase Accession/Entrez ID	MIMAT0017986	79691
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	QTRTD1

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3609	rs1201010739 chr7:98881721    C/A rs1379314154 chr7:98881711    G/T rs1433840969 chr7:98881723    G/A rs1360895354 chr7:98881703    A/C rs955400524 chr7:98881707    A/G rs955400524 chr7:98881707    A/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	QTRT2	chr3:113780554(+) A-I      intronic chr3:113777600(+) A-I      intronic chr3:113803049(+) A-I      intronic chr3:113780447(+) A-I      intronic chr3:113780580(+) A-I      intronic chr3:113803035(+) A-I      intronic chr3:113780695(+) A-I      intronic chr3:113780542(+) A-I      intronic chr3:113780634(+) A-I      intronic chr3:113780958(+) A-I      intronic chr3:113803419(+) A-I      intronic chr3:113780614(+) A-I      intronic chr3:113782911(+) A-I      intronic chr3:113780660(+) A-I      intronic chr3:113803381(+) A-I      intronic chr3:113781160(+) A-I      intronic chr3:113803283(+) A-I      intronic chr3:113780993(+) A-I      intronic chr3:113803196(+) A-I      intronic chr3:113780443(+) A-I      intronic chr3:113780442(+) A-I      intronic chr3:113802989(+) A-I      intronic chr3:113780525(+) A-I      intronic chr3:113781027(+) A-I      intronic chr3:113780957(+) A-I      intronic chr3:113781155(+) A-I      intronic chr3:113781109(+) A-I      intronic chr3:113780608(+) A-I      intronic chr3:113782790(+) A-I      intronic chr3:113781173(+) A-I      intronic chr3:113781234(+) A-I      intronic chr3:113803209(+) A-I      intronic chr3:113803210(+) A-I      intronic chr3:113780949(+) A-I      intronic

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3609	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Colon cancer cell line (LIM1863)     -
	QTRT2	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleolus K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Colon cancer cells     24393600 Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3609
Interactor2: QTRT2

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.