Detail Information

Basic Information:


  VIRBase ID:  

HHID00073048

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3609:           ZNF318:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3609 ZNF318
miRBase
Accession/Entrez ID		 MIMAT0017986 24149
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - HRIHFB2436//TZF//ZFP318

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3609
rs1201010739 chr7:98881721    C/A
rs1379314154 chr7:98881711    G/T
rs1433840969 chr7:98881723    G/A
rs1360895354 chr7:98881703    A/C
rs955400524 chr7:98881707    A/G
rs955400524 chr7:98881707    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF318
chr6:43330200(-) A-I      intronic
chr6:43330210(-) A-I      intronic
chr6:43330368(-) A-I      intronic
chr6:43317242(-) A-I      intronic
chr6:43319256(-) A-I      intronic
chr6:43314064(-) A-I      intronic
chr6:43329956(-) A-I      intronic
chr6:43330521(-) A-I      intronic
chr6:43334511(-) A-I      intronic
chr6:43335711(-) A-I      intronic
chr6:43319278(-) A-I      intronic
chr6:43330091(-) A-I      intronic
chr6:43330373(-) A-I      intronic
chr6:43334728(-) A-I      intronic
chr6:43317210(-) A-I      intronic
chr6:43319628(-) A-I      intronic
chr6:43317213(-) A-I      intronic
chr6:43329955(-) A-I      intronic
chr6:43330204(-) A-I      intronic
chr6:43329781(-) A-I      intronic
chr6:43330531(-) A-I      intronic
chr6:43329187(-) A-I      intronic
chr6:43316608(-) A-I      intronic
chr6:43334686(-) A-I      intronic
chr6:43330042(-) A-I      intronic
chr6:43330377(-) A-I      intronic
chr6:43316550(-) A-I      intronic
chr6:43330383(-) A-I      intronic
chr6:43330027(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF318
chr6:43335343(-) A-C intron -    22484847
chr6:43312840(-) T-C intron -    22484847
chr6:43316608(-) A-G intron -    22484847
chr6:43317210(-) A-G intron -    22484847
chr6:43317231(-) A-G intron -    22484847
chr6:43319628(-) A-G intron -    22484847
chr6:43329781(-) A-G intron -    22484847
chr6:43329828(-) A-G intron -    22484847
chr6:43329955(-) A-G intron -    22484847
chr6:43330027(-) A-G intron -    22484847
chr6:43330042(-) A-G intron -    22484847
chr6:43330091(-) A-G intron -    22484847
chr6:43330332(-) A-G intron -    22484847
chr6:43330383(-) A-G intron -    22484847
chr6:43330422(-) C-T intron -    22484847
chr6:43330531(-) A-G intron -    22484847
chr6:43334686(-) A-G intron -    22484847
chr6:43334823(-) G-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF318
chr6:43304703-43304704(-) m6A 3'UTR//intron       24981863//28052920//27773535//22608085
chr6:43304710-43304711(-) m6A 3'UTR//intron       24981863//28052920//27773535//22608085
chr6:43304801-43304802(-) m6A 3'UTR//intron       24284625//24981863//28052920//27773535//22608085
chr6:43304824-43304825(-) m6A 3'UTR//intron       24284625//24981863//28052920//27773535//22608085
chr6:43304923-43304924(-) m6A CDS//intron       24284625//24981863//28052920//27773535//27371828//22608085
chr6:43304945-43304946(-) m6A CDS//intron       24284625//24981863//28052920//27773535//27371828//22608085
chr6:43304952-43304953(-) m6A CDS//intron       24284625//24981863//28052920//27773535//27371828//22608085
chr6:43304980-43304981(-) m6A CDS//intron       24284625//24981863//28052920//27773535//27371828//22608085
chr6:43305177-43305178(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305200-43305201(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305223-43305224(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305266-43305267(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305298-43305299(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305368-43305369(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305411-43305412(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305416-43305417(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305466-43305467(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305482-43305483(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305503-43305504(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305546-43305547(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305721-43305722(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305736-43305737(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43305806-43305807(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43305813-43305814(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43305833-43305834(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43305850-43305851(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43305895-43305896(-) m6A CDS//intron       25456834//24981863//28052920//27773535//27371828//22608085
chr6:43305918-43305919(-) m6A CDS//intron       24981863//28052920//27773535//27371828//22608085
chr6:43305941-43305942(-) m6A CDS//intron       24981863//28052920//27773535//27371828//22608085
chr6:43306132-43306133(-) m6A CDS//intron       27773535
chr6:43306196-43306197(-) m6A CDS//intron       27773535
chr6:43306227-43306228(-) m6A CDS//intron       24981863//28052920//27773535
chr6:43306263-43306264(-) m6A CDS//intron       24981863//28052920//27773535
chr6:43306291-43306292(-) m6A CDS//intron       24981863//28052920//27773535
chr6:43306300-43306301(-) m6A CDS//intron       24981863//28052920//27773535
chr6:43306329-43306330(-) m6A CDS//intron       24981863//28052920//27773535
chr6:43306395-43306396(-) m6A CDS//intron       24981863//28052920//27773535
chr6:43306406-43306407(-) m6A CDS//intron       24981863//28052920//27773535
chr6:43306560-43306561(-) m6A CDS//intron       24284625
chr6:43306637-43306638(-) m6A CDS//intron       24284625//22608085
chr6:43306658-43306659(-) m6A CDS//intron       24284625//22608085
chr6:43306673-43306674(-) m6A CDS//intron       24284625//22608085
chr6:43306755-43306756(-) m6A CDS//intron       22608085
chr6:43306916-43306917(-) m6A CDS//intron       -
chr6:43306970-43306971(-) m6A CDS//intron       24284625//24981863//22608085
chr6:43306988-43306989(-) m6A CDS//intron       24284625//24981863//22608085
chr6:43307035-43307036(-) m6A CDS//intron       24284625//24981863//28052920//22608085
chr6:43307091-43307092(-) m6A CDS//intron       24284625//24981863//28052920//27773535//27371828//22608085
chr6:43307147-43307148(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085
chr6:43307152-43307153(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085
chr6:43307183-43307184(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085
chr6:43307245-43307246(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085
chr6:43307282-43307283(-) m6A CDS//intron       24284625//24981863//28052920//27773535//22608085
chr6:43307299-43307300(-) m6A CDS//intron       24284625//24981863//28052920//27773535//22608085
chr6:43307421-43307422(-) m6A CDS//intron       24284625//24981863//27773535//27371828
chr6:43307524-43307525(-) m6A CDS//intron       24284625//27773535
chr6:43307574-43307575(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr6:43307585-43307586(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr6:43307699-43307700(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43307753-43307754(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43307801-43307802(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43307818-43307819(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43307967-43307968(-) m6A CDS//intron       24284625//24981863//28052920//27773535//27371828//22608085
chr6:43307980-43307981(-) m6A CDS//intron       24284625//24981863//28052920//27773535//27371828//22608085
chr6:43308010-43308011(-) m6A CDS//intron       24284625//24981863//28052920//27773535//27371828//22608085
chr6:43308031-43308032(-) m6A CDS//intron       24284625//24981863//28052920//27773535//27371828//22608085
chr6:43308114-43308115(-) m6A CDS//intron       24284625//24981863//28052920//27773535//22608085
chr6:43308126-43308127(-) m6A CDS//intron       24284625//24981863//28052920//27773535//22608085
chr6:43308161-43308162(-) m6A CDS//intron       24284625//24981863//28052920//27773535//22608085
chr6:43308193-43308194(-) m6A CDS//intron       24284625//24981863//28052920//27773535//22608085
chr6:43308223-43308224(-) m6A CDS//intron       24284625//24981863//28052920//27773535
chr6:43309912-43309913(-) m6A CDS//intron       24981863//27371828
chr6:43309928-43309929(-) m6A CDS//intron       24981863//27371828
chr6:43310460-43310461(-) m6A CDS       24981863//28052920//22608085
chr6:43310480-43310481(-) m6A CDS       24284625//24981863//28052920//22608085
chr6:43310603-43310604(-) m6A CDS       24284625//28052920//22608085
chr6:43316077-43316078(-) m6A CDS       24284625//28052920//22608085
chr6:43316212-43316213(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22608085
chr6:43316217-43316218(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22608085
chr6:43316269-43316270(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr6:43320121-43320122(-) m6A CDS       24209618//24981863//27773535//27371828//22608085
chr6:43320144-43320145(-) m6A CDS       24209618//24981863//27773535//27371828//22608085
chr6:43320193-43320194(-) m6A CDS       24981863//27773535
chr6:43322423-43322424(-) m6A CDS       24981863//27773535
chr6:43322593-43322594(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr6:43322620-43322621(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr6:43322636-43322637(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr6:43322731-43322732(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr6:43322741-43322742(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr6:43322818-43322819(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr6:43322899-43322900(-) m6A CDS       24284625//24981863//28052920//27773535//22575960//22608085
chr6:43322948-43322949(-) m6A CDS       24284625//24981863//28052920//27773535//22608085
chr6:43323046-43323047(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43323279-43323280(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:43323318-43323319(-) m6A CDS       24284625//24981863//27773535//22608085
chr6:43323596-43323597(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43323613-43323614(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43323686-43323687(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43323736-43323737(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43323750-43323751(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43323762-43323763(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43323770-43323771(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43324885-43324886(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr6:43325100-43325101(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43325165-43325166(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:43325203-43325204(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43325232-43325233(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43325283-43325284(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43325303-43325304(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43325366-43325367(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43325375-43325376(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr6:43325383-43325384(-) m6A CDS       24284625//25456834//24981863//28052920//27371828//22608085
chr6:43325397-43325398(-) m6A CDS       24284625//25456834//24981863//28052920//27371828//22608085
chr6:43337152-43337153(-) Y 5'UTR       26075521

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3609
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)     -
ZNF318
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3609
Interactor2: ZNF318

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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