Detail Information

Basic Information:


  VIRBase ID:  

HHID00073044

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3609:           CHSY1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3609 CHSY1
miRBase
Accession/Entrez ID		 MIMAT0017986 22856
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CHSY//ChSy-1//CSS1//TPBS

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3609
rs1201010739 chr7:98881721    C/A
rs1379314154 chr7:98881711    G/T
rs1433840969 chr7:98881723    G/A
rs1360895354 chr7:98881703    A/C
rs955400524 chr7:98881707    A/G
rs955400524 chr7:98881707    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CHSY1
chr15:101716954(-) A-I      3'UTR
chr15:101716967(-) A-I      3'UTR
chr15:101716836(-) A-I      3'UTR
chr15:101716938(-) A-I      3'UTR
chr15:101716944(-) A-I      3'UTR
chr15:101716877(-) A-I      3'UTR
chr15:101716873(-) A-I      3'UTR
chr15:101716979(-) A-I      3'UTR
chr15:101760136(-) A-I      intronic
chr15:101716853(-) A-I      3'UTR
chr15:101769968(-) A-I      intronic
chr15:101769946(-) A-I      intronic
chr15:101769932(-) A-I      intronic
chr15:101769924(-) A-I      intronic
chr15:101769920(-) A-I      intronic
chr15:101769894(-) A-I      intronic
chr15:101770268(-) A-I      intronic
chr15:101770320(-) A-I      intronic
chr15:101761576(-) A-I      intronic
chr15:101727643(-) A-I      intronic
chr15:101760034(-) A-I      intronic
chr15:101724768(-) A-I      intronic
chr15:101724773(-) A-I      intronic
chr15:101724774(-) A-I      intronic
chr15:101724800(-) A-I      intronic
chr15:101746034(-) A-I      intronic
chr15:101746044(-) A-I      intronic
chr15:101758599(-) A-I      intronic
chr15:101726837(-) A-I      intronic
chr15:101776845(-) A-I      intronic
chr15:101761507(-) A-I      intronic
chr15:101758622(-) A-I      intronic
chr15:101776837(-) A-I      intronic
chr15:101758636(-) A-I      intronic
chr15:101770060(-) A-I      intronic
chr15:101770365(-) A-I      intronic
chr15:101758681(-) A-I      intronic
chr15:101760160(-) A-I      intronic
chr15:101770363(-) A-I      intronic
chr15:101770326(-) A-I      intronic
chr15:101726816(-) A-I      intronic
chr15:101758758(-) A-I      intronic
chr15:101758768(-) A-I      intronic
chr15:101770030(-) A-I      intronic
chr15:101763450(-) A-I      intronic
chr15:101770029(-) A-I      intronic
chr15:101724828(-) A-I      intronic
chr15:101758876(-) A-I      intronic
chr15:101770325(-) A-I      intronic
chr15:101770068(-) A-I      intronic
chr15:101761653(-) A-I      intronic
chr15:101770324(-) A-I      intronic
chr15:101758886(-) A-I      intronic
chr15:101760040(-) A-I      intronic
chr15:101770323(-) A-I      intronic
chr15:101763403(-) A-I      intronic
chr15:101758887(-) A-I      intronic
chr15:101760068(-) A-I      intronic
chr15:101760120(-) A-I      intronic
chr15:101770275(-) A-I      intronic
chr15:101770322(-) A-I      intronic
chr15:101770019(-) A-I      intronic
chr15:101760152(-) A-I      intronic
chr15:101724758(-) A-I      intronic
chr15:101769988(-) A-I      intronic
chr15:101770285(-) A-I      intronic
chr15:101760110(-) A-I      intronic
chr15:101746110(-) A-I      intronic
chr15:101776918(-) A-I      intronic
chr15:101760234(-) A-I      intronic
chr15:101726885(-) A-I      intronic
chr15:101726966(-) A-I      intronic
chr15:101761481(-) A-I      intronic
chr15:101770329(-) A-I      intronic
chr15:101789902(-) A-I      intronic
chr15:101726817(-) A-I      intronic
chr15:101760109(-) A-I      intronic
chr15:101724692(-) A-I      intronic
chr15:101761657(-) A-I      intronic
chr15:101755871(-) A-I      intronic
chr15:101724718(-) A-I      intronic
chr15:101774817(-) A-I      intronic
chr15:101770214(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CHSY1
chr15:101716585-101716586(-) m6A 3'UTR       26404942
chr15:101716591-101716592(-) m6A 3'UTR       26404942
chr15:101717251-101717252(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr15:101717280-101717281(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr15:101717314-101717315(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr15:101717343-101717344(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr15:101717348-101717349(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr15:101717383-101717384(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr15:101717397-101717398(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr15:101717414-101717415(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr15:101717443-101717444(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr15:101717468-101717469(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr15:101717600-101717601(-) m6A CDS//exon       24284625//24981863//26404942//22608085
chr15:101717727-101717728(-) m6A CDS//exon       24284625//24209618//24981863//28052920//22575960//22608085
chr15:101717836-101717837(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr15:101717932-101717933(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:101717948-101717949(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:101718246-101718247(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:101718255-101718256(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:101718343-101718344(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:101718397-101718398(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr15:101718417-101718418(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr15:101718475-101718476(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr15:101718575-101718576(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:101718652-101718653(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr15:101718682-101718683(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr15:101718737-101718738(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr15:101718808-101718809(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr15:101718943-101718944(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr15:101719078-101719079(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr15:101719150-101719151(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr15:101726889-101726890(-) m6A exon//intron       24284625//24209618//24981863//27773535//22608085
chr15:101728206-101728207(-) m6A exon//intron       -
chr15:101728222-101728223(-) m6A exon//intron       -
chr15:101728231-101728232(-) m6A exon//intron       24981863
chr15:101728264-101728265(-) m6A exon//intron       24981863//27371828//22608085
chr15:101728286-101728287(-) m6A exon//intron       25456834//24981863//27371828//22608085
chr15:101728298-101728299(-) m6A exon//intron       25456834//24981863//27371828//22608085
chr15:101728317-101728318(-) m6A exon//intron       25456834//24981863//27371828//22608085
chr15:101728388-101728389(-) m6A exon//intron       25456834//27371828
chr15:101728406-101728407(-) m6A exon//intron       27371828
chr15:101729711-101729712(-) m6A exon//intron       24209618//22608085
chr15:101729738-101729739(-) m6A exon//intron       24284625//24209618//25456834//24981863//22608085
chr15:101729750-101729751(-) m6A exon//intron       24284625//24209618//25456834//24981863//22608085
chr15:101775452-101775453(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr15:101775475-101775476(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr15:101775507-101775508(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr15:101775536-101775537(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr15:101775554-101775555(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr15:101775566-101775567(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr15:101775617-101775618(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:101775660-101775661(-) m1A CDS       26863196
chr15:101775768-101775769(-) m6A CDS//exon       24284625//24209618//22608085
chr15:101782779-101782780(-) m6A exon//intron       24284625//24209618//22608085
chr15:101782785-101782786(-) m6A exon//intron       24284625//22608085
chr15:101791363-101791364(-) m6A CDS       24284625//24209618
chr15:101791407-101791408(-) m6A CDS       24209618
chr15:101791434-101791435(-) m6A CDS       24209618
chr15:101792010-101792011(-) m6A 5'UTR       24209618//25456834//24981863//27371828//27773536//22608085
chr15:101792060-101792061(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr15:101792075-101792076(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3609
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)     -
CHSY1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3609
Interactor2: CHSY1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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