Basic Information:

  VIRBase ID:  

HHID00073042

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3609:  MIMAT0017986          BAZ2A:  NM_001351156     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3609	BAZ2A
miRBase Accession/Entrez ID	MIMAT0017986	11176
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	TIP5//WALp3

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3609	rs1201010739 chr7:98881721    C/A rs1379314154 chr7:98881711    G/T rs1433840969 chr7:98881723    G/A rs1360895354 chr7:98881703    A/C rs955400524 chr7:98881707    A/G rs955400524 chr7:98881707    A/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	BAZ2A	chr12:57001379(-) A-I      intronic chr12:57002877(-) A-I      intronic chr12:57001384(-) A-I      intronic chr12:57001736(-) A-I      intronic chr12:57002857(-) A-I      intronic chr12:57001375(-) A-I      intronic chr12:57013085(-) A-I      intronic chr12:57013047(-) A-I      intronic chr12:57027790(-) A-I      intronic chr12:57014563(-) A-I      intronic chr12:57027789(-) A-I      intronic chr12:57027685(-) A-I      intronic chr12:57027684(-) A-I      intronic chr12:57027589(-) A-I      intronic chr12:57013042(-) A-I      intronic chr12:57013007(-) A-I      intronic chr12:57012759(-) A-I      intronic chr12:57002995(-) A-I      intronic chr12:57019220(-) A-I      intronic chr12:57002913(-) A-I      intronic chr12:57019171(-) A-I      intronic chr12:57019104(-) A-I      intronic chr12:57001782(-) A-I      intronic chr12:57002572(-) A-I      intronic chr12:57001921(-) A-I      intronic chr12:57016933(-) A-I      intronic chr12:57001975(-) A-I      intronic chr12:57015746(-) A-I      intronic chr12:57001992(-) A-I      intronic chr12:57001892(-) A-I      intronic chr12:57018619(-) A-I      intronic chr12:57002021(-) A-I      intronic chr12:57002099(-) A-I      intronic chr12:57001682(-) A-I      intronic chr12:57015605(-) A-I      intronic chr12:57001673(-) A-I      intronic chr12:57013043(-) A-I      intronic chr12:57001699(-) A-I      intronic chr12:57001660(-) A-I      intronic chr12:57001653(-) A-I      intronic chr12:57002585(-) A-I      intronic chr12:57013046(-) A-I      intronic chr12:57002118(-) A-I      intronic chr12:57001630(-) A-I      intronic chr12:57001622(-) A-I      intronic chr12:57002535(-) A-I      intronic chr12:57015575(-) A-I      intronic chr12:57001446(-) A-I      intronic chr12:57016856(-) A-I      intronic chr12:57002414(-) A-I      intronic chr12:57002550(-) A-I      intronic chr12:57002595(-) A-I      intronic chr12:57014568(-) A-I      intronic chr12:57014203(-) A-I      intronic chr12:57001422(-) A-I      intronic chr12:57001334(-) A-I      intronic chr12:57001333(-) A-I      intronic chr12:57002644(-) A-I      intronic chr12:57001777(-) A-I      intronic chr12:57001324(-) A-I      intronic chr12:57015601(-) A-I      intronic chr12:57001284(-) A-I      intronic chr12:57002430(-) A-I      intronic chr12:57014209(-) A-I      intronic chr12:57001261(-) A-I      intronic chr12:57001720(-) A-I      intronic chr12:57019045(-) A-I      intronic chr12:57014166(-) A-I      intronic chr12:57001716(-) A-I      intronic chr12:56996934(-) A-I      intronic chr12:57014416(-) A-I      intronic chr12:57002828(-) A-I      intronic chr12:57002662(-) A-I      intronic chr12:57016839(-) A-I      intronic chr12:57001267(-) A-I      intronic chr12:57002482(-) A-I      intronic chr12:57014564(-) A-I      intronic chr12:57002416(-) A-I      intronic chr12:57019055(-) A-I      intronic chr12:57001745(-) A-I      intronic chr12:57013729(-) A-I      intronic chr12:57001914(-) A-I      intronic chr12:57002868(-) A-I      intronic chr12:57002566(-) A-I      intronic chr12:57002514(-) A-I      intronic chr12:57015747(-) A-I      intronic chr12:57002016(-) A-I      intronic chr12:57014241(-) A-I      intronic chr12:57003103(-) A-I      intronic chr12:57001967(-) A-I      intronic chr12:57002796(-) A-I      intronic chr12:57001361(-) A-I      intronic chr12:57001752(-) A-I      intronic chr12:57018578(-) A-I      intronic chr12:57027687(-) A-I      intronic chr12:57015697(-) A-I      intronic chr12:57002786(-) A-I      intronic chr12:57002822(-) A-I      intronic chr12:57002150(-) A-I      intronic chr12:57001832(-) A-I      intronic chr12:57014199(-) A-I      intronic chr12:57001900(-) A-I      intronic chr12:57019213(-) A-I      intronic chr12:56999311(-) A-I      intronic chr12:57018611(-) A-I      intronic chr12:57027584(-) A-I      intronic chr12:57002142(-) A-I      intronic chr12:57002034(-) A-I      intronic chr12:57002837(-) A-I      intronic chr12:57013621(-) A-I      intronic chr12:57014441(-) A-I      intronic chr12:57001359(-) A-I      intronic chr12:57001764(-) A-I      intronic chr12:57018584(-) A-I      intronic chr12:57001330(-) A-I      intronic chr12:57013210(-) A-I      intronic chr12:57016831(-) A-I      intronic chr12:57003051(-) A-I      intronic chr12:57001389(-) A-I      intronic chr12:57015673(-) A-I      intronic chr12:57001320(-) A-I      intronic chr12:57014371(-) A-I      intronic chr12:57014202(-) A-I      intronic chr12:57016093(-) A-I      intronic chr12:57013636(-) A-I      intronic chr12:57013542(-) A-I      intronic chr12:57014481(-) A-I      intronic chr12:57001927(-) A-I      intronic chr12:57001271(-) A-I      intronic chr12:57014201(-) A-I      intronic chr12:57002987(-) A-I      intronic chr12:57027681(-) A-I      intronic chr12:57002731(-) A-I      intronic chr12:57002096(-) A-I      intronic chr12:57016085(-) A-I      intronic chr12:57001336(-) A-I      intronic chr12:57016037(-) A-I      intronic chr12:57002556(-) A-I      intronic chr12:57019077(-) A-I      intronic chr12:57001788(-) A-I      intronic chr12:57001913(-) A-I      intronic chr12:57002154(-) A-I      intronic chr12:57016041(-) A-I      intronic chr12:57001819(-) A-I      intronic chr12:57002688(-) A-I      intronic chr12:57018562(-) A-I      intronic chr12:57015611(-) A-I      intronic chr12:57014404(-) A-I      intronic chr12:57001339(-) A-I      intronic chr12:57001232(-) A-I      intronic chr12:57016000(-) A-I      intronic chr12:57002375(-) A-I      intronic chr12:57002761(-) A-I      intronic chr12:57027677(-) A-I      intronic chr12:57001323(-) A-I      intronic chr12:57001436(-) A-I      intronic chr12:57019009(-) A-I      intronic chr12:57016012(-) A-I      intronic chr12:57021129(-) A-I      intronic chr12:57013671(-) A-I      intronic chr12:57001608(-) A-I      intronic chr12:57002148(-) A-I      intronic chr12:57001332(-) A-I      intronic chr12:57001376(-) A-I      intronic chr12:57012777(-) A-I      intronic chr12:57014440(-) A-I      intronic chr12:57001360(-) A-I      intronic chr12:57001620(-) A-I      intronic chr12:57003089(-) A-I      intronic chr12:57002634(-) A-I      intronic chr12:57009855(-) A-I      intronic chr12:57001413(-) A-I      intronic chr12:57016038(-) A-I      intronic chr12:57002044(-) A-I      intronic chr12:57003102(-) A-I      intronic chr12:57013600(-) A-I      intronic chr12:57013176(-) A-I      intronic chr12:57015593(-) A-I      intronic chr12:57000852(-) A-I      intronic chr12:57001428(-) A-I      intronic chr12:57003004(-) A-I      intronic chr12:57002890(-) A-I      intronic chr12:57002069(-) A-I      intronic chr12:57002529(-) A-I      intronic chr12:57002093(-) A-I      intronic chr12:57016002(-) A-I      intronic chr12:57002491(-) A-I      intronic chr12:57002112(-) A-I      intronic chr12:57001294(-) A-I      intronic chr12:57002860(-) A-I      intronic chr12:57001781(-) A-I      intronic chr12:57002859(-) A-I      intronic chr12:57009816(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	BAZ2A	chr12:57001375(-) A-I intron -    21960545 chr12:57001376(-) A-I intron -    21960545 chr12:57018584(-) A-I intron -    21960545 chr12:57001376(-) A-G intron -    22484847 chr12:57001620(-) A-G intron -    22484847 chr12:57002034(-) A-G intron -    22484847 chr12:57002044(-) A-G intron -    22484847 chr12:57002786(-) A-G intron -    22484847 chr12:57002796(-) A-G intron -    22484847 chr12:57002860(-) A-G intron -    22484847 chr12:57002890(-) A-G intron -    22484847 chr12:57003051(-) A-G intron -    22484847 chr12:57001271(-) A-G intron -    22484847 chr12:57001294(-) A-G intron -    22484847 chr12:57001320(-) A-G intron -    22484847 chr12:57001323(-) A-G intron -    22484847 chr12:57001330(-) A-G intron -    22484847 chr12:57001391(-) T-C intron -    22484847 chr12:57001413(-) A-G intron -    22484847 chr12:57001436(-) A-G intron -    22484847 chr12:57001752(-) A-G intron -    22484847 chr12:57001764(-) A-G intron -    22484847 chr12:57001781(-) A-G intron -    22484847 chr12:57001788(-) A-G intron -    22484847 chr12:57001819(-) A-G intron -    22484847 chr12:57001832(-) A-G intron -    22484847 chr12:57001967(-) A-G intron -    22484847 chr12:57002096(-) A-G intron -    22484847 chr12:57002127(-) A-C intron -    22484847 chr12:57002142(-) A-G intron -    22484847 chr12:57002150(-) A-G intron -    22484847 chr12:57002154(-) A-G intron -    22484847 chr12:57002731(-) A-G intron -    22484847 chr12:57002761(-) A-G intron -    22484847 chr12:57002822(-) A-G intron -    22484847 chr12:57002859(-) A-G intron -    22484847 chr12:57002987(-) A-G intron -    22484847 chr12:57003102(-) A-G intron -    22484847 chr12:57003103(-) A-G intron -    22484847 chr12:57013542(-) A-G intron -    22484847 chr12:57013600(-) A-G intron -    22484847 chr12:57013621(-) A-G intron -    22484847 chr12:57014199(-) A-G intron -    22484847 chr12:57014201(-) A-G intron -    22484847 chr12:57014202(-) A-G intron -    22484847 chr12:57014241(-) A-G intron -    22484847 chr12:57014404(-) A-G intron -    22484847 chr12:57014441(-) A-G intron -    22484847 chr12:57015593(-) A-G intron -    22484847 chr12:57015611(-) A-G intron -    22484847 chr12:57015673(-) A-G intron -    22484847 chr12:57016000(-) A-G intron -    22484847 chr12:57016002(-) A-G intron -    22484847 chr12:57016012(-) A-G intron -    22484847 chr12:57016037(-) A-G intron -    22484847 chr12:57016038(-) A-G intron -    22484847 chr12:57016041(-) A-G intron -    22484847 chr12:57016085(-) A-G intron -    22484847 chr12:57016093(-) A-G intron -    22484847 chr12:57016831(-) A-G intron -    22484847 chr12:57016944(-) G-A intron -    22484847 chr12:57021625(-) C-T intron -    22484847 chr12:57027677(-) A-G intron -    22484847 chr12:57027681(-) A-G intron -    22484847 chr12:57027687(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	BAZ2A	chr12:56989999-56990000(-) m6A 3'UTR       - chr12:56990055-56990056(-) m6A 3'UTR       27773535 chr12:56990216-56990217(-) m1A 3'UTR       26863410 chr12:56990262-56990263(-) m6A 3'UTR       24284625 chr12:56991005-56991006(-) m6A 3'UTR       - chr12:56991026-56991027(-) m6A 3'UTR       - chr12:56991086-56991087(-) m6A 3'UTR       - chr12:56991141-56991142(-) m6A 3'UTR       - chr12:56991795-56991796(-) m6A 3'UTR       24284625//27773535 chr12:56991898-56991899(-) m6A 3'UTR       24284625//24981863//27773535 chr12:56991912-56991913(-) m6A 3'UTR       24284625//24981863//27773535 chr12:56991939-56991940(-) m6A 3'UTR       24284625//24981863//27773535 chr12:56991965-56991966(-) m6A 3'UTR       24284625//24981863//27773535 chr12:56991985-56991986(-) m6A 3'UTR       24284625//24981863//27773535 chr12:56991993-56991994(-) m6A 3'UTR       24284625//24981863//27773535 chr12:56992173-56992174(-) m6A 3'UTR       24284625//24981863//27773535 chr12:56992306-56992307(-) m6A 3'UTR       24284625//24981863//27773535 chr12:56992345-56992346(-) m6A 3'UTR       24284625//24981863//27773535 chr12:56992351-56992352(-) m6A 3'UTR       24981863//27773535 chr12:56992416-56992417(-) m6A CDS       27773535 chr12:56992981-56992982(-) m1A CDS       26863410 chr12:56993065-56993066(-) m6A CDS       - chr12:56994131-56994132(-) m6A CDS       22575960 chr12:56994147-56994148(-) m6A CDS       22575960 chr12:56994166-56994167(-) m6A CDS       22575960 chr12:56995036-56995037(-) m6A CDS//exon       27773535 chr12:56995057-56995058(-) m6A CDS//exon       27773535 chr12:56995094-56995095(-) m6A CDS//exon       27773535 chr12:56995177-56995178(-) m6A CDS//exon       27773535 chr12:56995221-56995222(-) m6A exon//intron       27773535 chr12:56995229-56995230(-) m6A exon//intron       27773535 chr12:56995237-56995238(-) m6A exon//intron       24981863//27773535 chr12:56995372-56995373(-) m6A CDS       24284625//24981863//28052920//27773535 chr12:56995513-56995514(-) m6A CDS       24284625//24981863//28052920//27773535 chr12:56995518-56995519(-) m6A CDS       24284625//24981863//27773535 chr12:56995580-56995581(-) m6A CDS       24284625//24981863//27773535 chr12:56995761-56995762(-) m6A CDS       24284625 chr12:56995823-56995824(-) m6A CDS       24284625 chr12:56997151-56997152(-) m6A CDS       27773536 chr12:56997380-56997381(-) m6A CDS       24981863//27773535//27371828//27773536//22575960 chr12:56997440-56997441(-) Gm CDS       - chr12:56997458-56997459(-) m6A CDS       24981863//27773535//22575960 chr12:56997476-56997477(-) m6A CDS       24981863//27773535//22575960 chr12:56998030-56998031(-) m6A CDS//exon       22575960 chr12:56998824-56998825(-) m6A exon//intron       27773535 chr12:56999052-56999053(-) m6A CDS//exon       27371828 chr12:56999137-56999138(-) m6A exon//intron       27371828 chr12:56999173-56999174(-) m6A exon//intron       27371828 chr12:56999184-56999185(-) m6A exon//intron       27371828 chr12:56999232-56999233(-) m6A exon//intron       27371828 chr12:56999528-56999529(-) m6A exon//intron       27773535 chr12:56999546-56999547(-) m6A exon//intron       27773535 chr12:56999571-56999572(-) m6A exon//intron       27773535 chr12:56999648-56999649(-) m1A CDS//exon       26863196 chr12:56999714-56999715(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085 chr12:56999811-56999812(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr12:56999825-56999826(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr12:57000071-57000072(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr12:57000078-57000079(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr12:57000433-57000434(-) m6A CDS//exon       24209618//24981863//28052920//27773535//27371828//22608085 chr12:57000469-57000470(-) m1A CDS//exon       26863196 chr12:57000514-57000515(-) m6A CDS//exon       24209618//24981863//28052920//27773535//27371828//22608085 chr12:57003532-57003533(-) m6A CDS//exon       24209618//24981863//28052920//27773535//27371828 chr12:57003551-57003552(-) m6A CDS//exon       24981863 chr12:57003555-57003556(-) m6A CDS//exon       24209618//24981863//28052920//27773535//27371828 chr12:57003560-57003561(-) m6A CDS//exon       24209618//24981863//28052920//27773535//27371828 chr12:57003630-57003631(-) m6A CDS       24209618//24981863//27773535//27371828 chr12:57003647-57003648(-) m6A CDS       24981863//27773535 chr12:57003907-57003908(-) m6A 3'UTR//CDS       27773535 chr12:57004248-57004249(-) m6A CDS       24981863//27773535 chr12:57005084-57005085(-) m6A exon//intron       24981863//27773535//27371828 chr12:57005657-57005658(-) Y CDS       26075521 chr12:57005963-57005964(-) m6A CDS       24981863//27773535 chr12:57005976-57005977(-) m6A CDS       27773535 chr12:57005992-57005993(-) m6A CDS       27773535 chr12:57006861-57006862(-) m6A CDS//exon       27773535 chr12:57006941-57006942(-) m6A CDS//exon       27773535 chr12:57006959-57006960(-) m6A CDS//exon       27773535 chr12:57007000-57007001(-) m6A CDS//exon       27773535 chr12:57008929-57008930(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085 chr12:57008959-57008960(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr12:57008987-57008988(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr12:57009035-57009036(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr12:57009176-57009177(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085 chr12:57009207-57009208(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085 chr12:57009252-57009253(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr12:57009321-57009322(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085 chr12:57011198-57011199(-) m6A CDS//exon//intron       24284625//24209618//27773535 chr12:57011248-57011249(-) m6A CDS//exon//intron       24284625//24209618//27773535 chr12:57011254-57011255(-) m6A CDS//exon//intron       24284625//24209618//27773535 chr12:57023836-57023837(-) m6A 5'UTR//intron       27773535 chr12:57023965-57023966(-) m6A 5'UTR//exon//intron       24284625//27371828 chr12:57024022-57024023(-) m6A 5'UTR//exon//intron       24284625//24981863//27371828 chr12:57024029-57024030(-) m6A 5'UTR//exon//intron       24284625//24981863//27371828 chr12:57024036-57024037(-) m6A 5'UTR//exon//intron       24284625//24981863//27371828 chr12:57024564-57024565(-) m6A 5'UTR//exon//intron       24981863//27371828 chr12:57024583-57024584(-) m6A 5'UTR//exon//intron       24981863//27371828 chr12:57030015-57030016(-) m6A 5'UTR//exon       24981863//27773535 chr12:57030146-57030147(-) m6A 5'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3609	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Colon cancer cell line (LIM1863)     -
	BAZ2A	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3609
Interactor2: BAZ2A

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	CDS
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.