Basic Information:

  VIRBase ID:  

HHID00073040

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3609:  MIMAT0017986          CERT1:  NM_001130105     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3609	CERT1
miRBase Accession/Entrez ID	MIMAT0017986	10087
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	CERT//CERTL//COL4A3BP//GPBP//MRD34//STARD11

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3609	rs1201010739 chr7:98881721    C/A rs1379314154 chr7:98881711    G/T rs1433840969 chr7:98881723    G/A rs1360895354 chr7:98881703    A/C rs955400524 chr7:98881707    A/G rs955400524 chr7:98881707    A/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CERT1	chr5:74686954(-) A-I      intronic chr5:74686985(-) A-I      intronic chr5:74690292(-) A-I      intronic chr5:74690472(-) A-I      intronic chr5:74695750(-) A-I      intronic chr5:74695794(-) A-I      intronic chr5:74695929(-) A-I      intronic chr5:74671174(-) A-I      intronic chr5:74671189(-) A-I      intronic chr5:74671354(-) A-I      intronic chr5:74673671(-) A-I      intronic chr5:74673686(-) A-I      intronic chr5:74673728(-) A-I      intronic chr5:74673782(-) A-I      intronic chr5:74673895(-) A-I      intronic chr5:74674133(-) A-I      intronic chr5:74674182(-) A-I      intronic chr5:74674800(-) A-I      intronic chr5:74674960(-) A-I      intronic chr5:74675567(-) A-I      intronic chr5:74705780(-) A-I      intronic chr5:74705876(-) A-I      intronic chr5:74723377(-) A-I      intronic chr5:74724391(-) A-I      intronic chr5:74724403(-) A-I      intronic chr5:74724446(-) A-I      intronic chr5:74675585(-) A-I      intronic chr5:74724451(-) A-I      intronic chr5:74725152(-) A-I      intronic chr5:74725155(-) A-I      intronic chr5:74725159(-) A-I      intronic chr5:74680141(-) A-I      intronic chr5:74686675(-) A-I      intronic chr5:74725191(-) A-I      intronic chr5:74725194(-) A-I      intronic chr5:74725220(-) A-I      intronic chr5:74725240(-) A-I      intronic chr5:74725274(-) A-I      intronic chr5:74725476(-) A-I      intronic chr5:74725506(-) A-I      intronic chr5:74726822(-) A-I      intronic chr5:74731925(-) A-I      intronic chr5:74731926(-) A-I      intronic chr5:74732009(-) A-I      intronic chr5:74732063(-) A-I      intronic chr5:74678963(-) A-I      intronic chr5:74678964(-) A-I      intronic chr5:74678965(-) A-I      intronic chr5:74678970(-) A-I      intronic chr5:74678982(-) A-I      intronic chr5:74678987(-) A-I      intronic chr5:74679030(-) A-I      intronic chr5:74705881(-) A-I      intronic chr5:74705888(-) A-I      intronic chr5:74706181(-) A-I      intronic chr5:74706191(-) A-I      intronic chr5:74706200(-) A-I      intronic chr5:74743434(-) A-I      intronic chr5:74752249(-) A-I      intronic chr5:74754415(-) A-I      intronic chr5:74755411(-) A-I      intronic chr5:74755421(-) A-I      intronic chr5:74763342(-) A-I      intronic chr5:74763344(-) A-I      intronic chr5:74715899(-) A-I      intronic chr5:74715934(-) A-I      intronic chr5:74709414(-) A-I      intronic chr5:74715940(-) A-I      intronic chr5:74715982(-) A-I      intronic chr5:74716059(-) A-I      intronic chr5:74716070(-) A-I      intronic chr5:74716075(-) A-I      intronic chr5:74718237(-) A-I      intronic chr5:74718238(-) A-I      intronic chr5:74718319(-) A-I      intronic chr5:74706245(-) A-I      intronic chr5:74718329(-) A-I      intronic chr5:74709432(-) A-I      intronic chr5:74718342(-) A-I      intronic chr5:74718347(-) A-I      intronic chr5:74718359(-) A-I      intronic chr5:74718420(-) A-I      intronic chr5:74720693(-) A-I      intronic chr5:74720773(-) A-I      intronic chr5:74720819(-) A-I      intronic chr5:74754570(-) A-I      intronic chr5:74754559(-) A-I      intronic chr5:74705589(-) A-I      intronic chr5:74705587(-) A-I      intronic chr5:74705586(-) A-I      intronic chr5:74720821(-) A-I      intronic chr5:74720835(-) A-I      intronic chr5:74723239(-) A-I      intronic chr5:74723252(-) A-I      intronic chr5:74723312(-) A-I      intronic chr5:74705580(-) A-I      intronic chr5:74705572(-) A-I      intronic chr5:74705567(-) A-I      intronic chr5:74705558(-) A-I      intronic chr5:74673786(-) A-I      intronic chr5:74673781(-) A-I      intronic chr5:74673753(-) A-I      intronic chr5:74754656(-) A-I      intronic chr5:74752387(-) A-I      intronic chr5:74752296(-) A-I      intronic chr5:74725426(-) A-I      intronic chr5:74686753(-) A-I      intronic chr5:74686798(-) A-I      intronic chr5:74675680(-) A-I      intronic chr5:74676369(-) A-I      intronic chr5:74707404(-) A-I      intronic chr5:74716745(-) A-I      intronic chr5:74754593(-) A-I      intronic chr5:74723427(-) A-I      intronic chr5:74705390(-) A-I      intronic chr5:74720924(-) A-I      intronic chr5:74674198(-) A-I      intronic chr5:74673803(-) A-I      intronic chr5:74673720(-) A-I      intronic chr5:74686757(-) A-I      intronic chr5:74673783(-) A-I      intronic chr5:74700637(-) A-I      intronic chr5:74673808(-) A-I      intronic chr5:74755902(-) A-I      intronic chr5:74674782(-) A-I      intronic chr5:74676478(-) A-I      intronic chr5:74732884(-) A-I      intronic chr5:74724336(-) A-I      intronic chr5:74673805(-) A-I      intronic chr5:74689369(-) A-I      intronic chr5:74715986(-) A-I      intronic chr5:74700693(-) A-I      intronic chr5:74673901(-) A-I      intronic chr5:74675479(-) A-I      intronic chr5:74673879(-) A-I      intronic chr5:74791261(-) A-I      intronic chr5:74705385(-) A-I      intronic chr5:74687009(-) A-I      intronic chr5:74673822(-) A-I      intronic chr5:74674839(-) A-I      intronic chr5:74718385(-) A-I      intronic chr5:74755901(-) A-I      intronic chr5:74671403(-) A-I      intronic chr5:74752487(-) A-I      intronic chr5:74674799(-) A-I      intronic chr5:74691421(-) A-I      intronic chr5:74754474(-) A-I      intronic chr5:74732691(-) A-I      intronic chr5:74707409(-) A-I      intronic chr5:74754515(-) A-I      intronic chr5:74674001(-) A-I      intronic chr5:74673986(-) A-I      intronic chr5:74716352(-) A-I      intronic chr5:74719398(-) A-I      intronic chr5:74752377(-) A-I      intronic chr5:74674848(-) A-I      intronic chr5:74673799(-) A-I      intronic chr5:74686731(-) A-I      intronic chr5:74716076(-) A-I      intronic chr5:74788142(-) A-I      intronic chr5:74709440(-) A-I      intronic chr5:74674945(-) A-I      intronic chr5:74720827(-) A-I      intronic chr5:74726758(-) A-I      intronic chr5:74690467(-) A-I      intronic chr5:74673878(-) A-I      intronic chr5:74673823(-) A-I      intronic chr5:74738224(-) A-I      intronic chr5:74686697(-) A-I      intronic chr5:74689601(-) A-I      intronic chr5:74726645(-) A-I      intronic chr5:74705829(-) A-I      intronic chr5:74675583(-) A-I      intronic chr5:74706313(-) A-I      intronic chr5:74754541(-) A-I      intronic chr5:74673674(-) A-I      intronic chr5:74731996(-) A-I      intronic chr5:74718366(-) A-I      intronic chr5:74674974(-) A-I      intronic chr5:74754501(-) A-I      intronic chr5:74674162(-) A-I      intronic chr5:74674816(-) A-I      intronic chr5:74674812(-) A-I      intronic chr5:74725283(-) A-I      intronic chr5:74752328(-) A-I      intronic chr5:74716021(-) A-I      intronic chr5:74674811(-) A-I      intronic chr5:74673807(-) A-I      intronic chr5:74673885(-) A-I      intronic chr5:74705826(-) A-I      intronic chr5:74706323(-) A-I      intronic chr5:74700749(-) A-I      intronic chr5:74674821(-) A-I      intronic chr5:74686851(-) A-I      intronic chr5:74686800(-) A-I      intronic chr5:74673828(-) A-I      intronic chr5:74724314(-) A-I      intronic chr5:74726606(-) A-I      intronic chr5:74718398(-) A-I      intronic chr5:74676465(-) A-I      intronic chr5:74675618(-) A-I      intronic chr5:74675493(-) A-I      intronic chr5:74673727(-) A-I      intronic chr5:74752259(-) A-I      intronic chr5:74689546(-) A-I      intronic chr5:74674921(-) A-I      intronic chr5:74673745(-) A-I      intronic chr5:74786462(-) A-I      intronic chr5:74674944(-) A-I      intronic chr5:74791255(-) A-I      intronic chr5:74726677(-) A-I      intronic chr5:74752250(-) A-I      intronic chr5:74700668(-) A-I      intronic chr5:74690122(-) A-I      intronic chr5:74674199(-) A-I      intronic chr5:74684709(-) A-I      intronic chr5:74700670(-) A-I      intronic chr5:74674769(-) A-I      intronic chr5:74724299(-) A-I      intronic chr5:74702471(-) A-I      intronic chr5:74752326(-) A-I      intronic chr5:74718380(-) A-I      intronic chr5:74674968(-) A-I      intronic chr5:74725303(-) A-I      intronic chr5:74682936(-) A-I      intronic chr5:74674965(-) A-I      intronic chr5:74684741(-) A-I      intronic chr5:74691268(-) A-I      intronic chr5:74690363(-) A-I      intronic chr5:74726757(-) A-I      intronic chr5:74726749(-) A-I      intronic chr5:74786456(-) A-I      intronic chr5:74715950(-) A-I      intronic chr5:74688673(-) A-I      intronic chr5:74673872(-) A-I      intronic chr5:74686721(-) A-I      intronic chr5:74673836(-) A-I      intronic chr5:74674950(-) A-I      intronic chr5:74673773(-) A-I      intronic chr5:74686707(-) A-I      intronic chr5:74674922(-) A-I      intronic chr5:74674747(-) A-I      intronic chr5:74674833(-) A-I      intronic chr5:74720775(-) A-I      intronic chr5:74743679(-) A-I      intronic chr5:74705499(-) A-I      intronic chr5:74695874(-) A-I      intronic

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3609	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Colon cancer cell line (LIM1863)     -
	CERT1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3609
Interactor2: CERT1

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.