Detail Information

Basic Information:


  VIRBase ID:  

HHID00073037

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3609:           ZBTB5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3609 ZBTB5
miRBase
Accession/Entrez ID		 MIMAT0017986 9925
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3609
rs1201010739 chr7:98881721    C/A
rs1379314154 chr7:98881711    G/T
rs1433840969 chr7:98881723    G/A
rs1360895354 chr7:98881703    A/C
rs955400524 chr7:98881707    A/G
rs955400524 chr7:98881707    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZBTB5
chr9:37457477(-) A-I      intronic
chr9:37457430(-) A-I      intronic
chr9:37457393(-) A-I      intronic
chr9:37460768(-) A-I      intronic
chr9:37460660(-) A-I      intronic
chr9:37457434(-) A-I      intronic
chr9:37460645(-) A-I      intronic
chr9:37457478(-) A-I      intronic
chr9:37457473(-) A-I      intronic
chr9:37457398(-) A-I      intronic
chr9:37459333(-) A-I      intronic
chr9:37459345(-) A-I      intronic
chr9:37459357(-) A-I      intronic
chr9:37459394(-) A-I      intronic
chr9:37460333(-) A-I      intronic
chr9:37460312(-) A-I      intronic
chr9:37460296(-) A-I      intronic
chr9:37460083(-) A-I      intronic
chr9:37459909(-) A-I      intronic
chr9:37459846(-) A-I      intronic
chr9:37459824(-) A-I      intronic
chr9:37459819(-) A-I      intronic
chr9:37459805(-) A-I      intronic
chr9:37457406(-) A-I      intronic
chr9:37457410(-) A-I      intronic
chr9:37457426(-) A-I      intronic
chr9:37453253(-) A-I      intronic
chr9:37460394(-) A-I      intronic
chr9:37453348(-) A-I      intronic
chr9:37457385(-) A-I      intronic
chr9:37451443(-) A-I      intronic
chr9:37457494(-) A-I      intronic
chr9:37457321(-) A-I      intronic
chr9:37462676(-) A-I      intronic
chr9:37460617(-) A-I      intronic
chr9:37462685(-) A-I      intronic
chr9:37451094(-) A-I      intronic
chr9:37453217(-) A-I      intronic
chr9:37448958(-) A-I      intronic
chr9:37460756(-) A-I      intronic
chr9:37461557(-) A-I      intronic
chr9:37451164(-) A-I      intronic
chr9:37462803(-) A-I      intronic
chr9:37457310(-) A-I      intronic
chr9:37460742(-) A-I      intronic
chr9:37444086(-) A-I      intronic
chr9:37460736(-) A-I      intronic
chr9:37445935(-) A-I      intronic
chr9:37459421(-) A-I      intronic
chr9:37444393(-) A-I      intronic
chr9:37460755(-) A-I      intronic
chr9:37460529(-) A-I      intronic
chr9:37453312(-) A-I      intronic
chr9:37461559(-) A-I      intronic
chr9:37459335(-) A-I      intronic
chr9:37453395(-) A-I      intronic
chr9:37457329(-) A-I      intronic
chr9:37462833(-) A-I      intronic
chr9:37459707(-) A-I      intronic
chr9:37460803(-) A-I      intronic
chr9:37459737(-) A-I      intronic
chr9:37457366(-) A-I      intronic
chr9:37451077(-) A-I      intronic
chr9:37461625(-) A-I      intronic
chr9:37460779(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZBTB5
chr9:37451354(-) T-C intron -    22484847
chr9:37451357(-) T-C intron -    22484847
chr9:37460806(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZBTB5
chr9:37438458-37438459(-) m6A 3'UTR       24284625//25456834//27773535//22608085
chr9:37438521-37438522(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr9:37438634-37438635(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr9:37438676-37438677(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr9:37438704-37438705(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr9:37439583-37439584(-) m6A 3'UTR       27773535
chr9:37439706-37439707(-) m6A 3'UTR       27773535
chr9:37440304-37440305(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr9:37440378-37440379(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr9:37440404-37440405(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr9:37440473-37440474(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:37440496-37440497(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:37440564-37440565(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:37440687-37440688(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:37440881-37440882(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr9:37441034-37441035(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:37441048-37441049(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:37441071-37441072(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:37441124-37441125(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:37441132-37441133(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:37441145-37441146(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:37441250-37441251(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:37441271-37441272(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:37441388-37441389(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr9:37441442-37441443(-) m6A CDS       24284625//24209618//27773535//22608085
chr9:37441607-37441608(-) m6A CDS       24981863//27773535//22575960
chr9:37441659-37441660(-) m6A CDS       24981863//22575960//22608085
chr9:37442098-37442099(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:37442200-37442201(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:37442222-37442223(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:37442360-37442361(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:37442367-37442368(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:37442449-37442450(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:37442494-37442495(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:37442504-37442505(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:37442524-37442525(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:37465370-37465371(-) m6A 5'UTR       25456834//24981863
chr9:37465391-37465392(-) m6A 5'UTR       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3609
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)     -
ZBTB5
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3609
Interactor2: ZBTB5

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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