Detail Information

Basic Information:


  VIRBase ID:  

HHID00073029

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3609:           RPA2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3609 RPA2
miRBase
Accession/Entrez ID		 MIMAT0017986 6118
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - REPA2//RP-A p32//RP-A p34//RPA32

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3609
rs1201010739 chr7:98881721    C/A
rs1379314154 chr7:98881711    G/T
rs1433840969 chr7:98881723    G/A
rs1360895354 chr7:98881703    A/C
rs955400524 chr7:98881707    A/G
rs955400524 chr7:98881707    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RPA2
chr1:28239999(-) A-I      intronic
chr1:28232277(-) A-I      intronic
chr1:28232796(-) A-I      intronic
chr1:28231366(-) A-I      intronic
chr1:28229633(-) A-I      intronic
chr1:28231380(-) A-I      intronic
chr1:28231376(-) A-I      intronic
chr1:28232754(-) A-I      intronic
chr1:28233092(-) A-I      intronic
chr1:28228011(-) A-I      intronic
chr1:28228006(-) A-I      intronic
chr1:28228002(-) A-I      intronic
chr1:28225297(-) A-I      intronic
chr1:28225627(-) A-I      intronic
chr1:28236028(-) A-I      intronic
chr1:28229610(-) A-I      intronic
chr1:28226396(-) A-I      intronic
chr1:28225220(-) A-I      intronic
chr1:28226366(-) A-I      intronic
chr1:28226356(-) A-I      intronic
chr1:28225217(-) A-I      intronic
chr1:28225185(-) A-I      intronic
chr1:28236021(-) A-I      intronic
chr1:28236015(-) A-I      intronic
chr1:28236014(-) A-I      intronic
chr1:28225142(-) A-I      intronic
chr1:28225132(-) A-I      intronic
chr1:28232343(-) A-I      intronic
chr1:28222951(-) A-I      intronic
chr1:28229585(-) A-I      intronic
chr1:28229576(-) A-I      intronic
chr1:28229569(-) A-I      intronic
chr1:28229509(-) A-I      intronic
chr1:28236007(-) A-I      intronic
chr1:28234867(-) A-I      intronic
chr1:28234581(-) A-I      intronic
chr1:28234570(-) A-I      intronic
chr1:28234436(-) A-I      intronic
chr1:28233191(-) A-I      intronic
chr1:28233154(-) A-I      intronic
chr1:28233093(-) A-I      intronic
chr1:28239643(-) A-I      intronic
chr1:28232996(-) A-I      intronic
chr1:28232959(-) A-I      intronic
chr1:28232826(-) A-I      intronic
chr1:28232770(-) A-I      intronic
chr1:28226330(-) A-I      intronic
chr1:28232287(-) A-I      intronic
chr1:28232271(-) A-I      intronic
chr1:28232235(-) A-I      intronic
chr1:28232052(-) A-I      intronic
chr1:28232003(-) A-I      intronic
chr1:28226320(-) A-I      intronic
chr1:28225929(-) A-I      intronic
chr1:28229480(-) A-I      intronic
chr1:28231949(-) A-I      intronic
chr1:28231901(-) A-I      intronic
chr1:28231890(-) A-I      intronic
chr1:28229469(-) A-I      intronic
chr1:28231838(-) A-I      intronic
chr1:28230551(-) A-I      intronic
chr1:28230547(-) A-I      intronic
chr1:28230491(-) A-I      intronic
chr1:28230229(-) A-I      intronic
chr1:28236148(-) A-I      intronic
chr1:28230013(-) A-I      intronic
chr1:28229988(-) A-I      intronic
chr1:28229658(-) A-I      intronic
chr1:28229635(-) A-I      intronic
chr1:28226397(-) A-I      intronic
chr1:28229198(-) A-I      intronic
chr1:28229027(-) A-I      intronic
chr1:28236215(-) A-I      intronic
chr1:28238837(-) A-I      intronic
chr1:28239589(-) A-I      intronic
chr1:28239628(-) A-I      intronic
chr1:28239642(-) A-I      intronic
chr1:28239646(-) A-I      intronic
chr1:28229022(-) A-I      intronic
chr1:28236101(-) A-I      intronic
chr1:28225904(-) A-I      intronic
chr1:28225894(-) A-I      intronic
chr1:28225888(-) A-I      intronic
chr1:28225868(-) A-I      intronic
chr1:28239714(-) A-I      intronic
chr1:28225830(-) A-I      intronic
chr1:28231356(-) A-I      intronic
chr1:28230111(-) A-I      intronic
chr1:28231268(-) A-I      intronic
chr1:28231945(-) A-I      intronic
chr1:28225468(-) A-I      intronic
chr1:28232989(-) A-I      intronic
chr1:28229581(-) A-I      intronic
chr1:28234371(-) A-I      intronic
chr1:28240060(-) A-I      intronic
chr1:28229513(-) A-I      intronic
chr1:28228959(-) A-I      intronic
chr1:28228091(-) A-I      intronic
chr1:28225274(-) A-I      intronic
chr1:28235148(-) A-I      intronic
chr1:28231435(-) A-I      intronic
chr1:28229622(-) A-I      intronic
chr1:28233183(-) A-I      intronic
chr1:28227349(-) A-I      intronic
chr1:28232795(-) A-I      intronic
chr1:28234488(-) A-I      intronic
chr1:28229976(-) A-I      intronic
chr1:28222825(-) A-I      intronic
chr1:28226791(-) A-I      intronic
chr1:28232977(-) A-I      intronic
chr1:28232053(-) A-I      intronic
chr1:28228974(-) A-I      intronic
chr1:28230504(-) A-I      intronic
chr1:28234484(-) A-I      intronic
chr1:28229543(-) A-I      intronic
chr1:28225867(-) A-I      intronic
chr1:28239934(-) A-I      intronic
chr1:28235241(-) A-I      intronic
chr1:28232684(-) A-I      intronic
chr1:28229704(-) A-I      intronic
chr1:28229613(-) A-I      intronic
chr1:28234711(-) A-I      intronic
chr1:28234840(-) A-I      intronic
chr1:28231296(-) A-I      intronic
chr1:28229526(-) A-I      intronic
chr1:28229233(-) A-I      intronic
chr1:28230085(-) A-I      intronic
chr1:28229578(-) A-I      intronic
chr1:28234860(-) A-I      intronic
chr1:28231312(-) A-I      intronic
chr1:28232981(-) A-I      intronic
chr1:28225933(-) A-I      intronic
chr1:28229508(-) A-I      intronic
chr1:28236001(-) A-I      intronic
chr1:28229643(-) A-I      intronic
chr1:28226375(-) A-I      intronic
chr1:28226516(-) A-I      intronic
chr1:28233018(-) A-I      intronic
chr1:28229210(-) A-I      intronic
chr1:28230118(-) A-I      intronic
chr1:28226747(-) A-I      intronic
chr1:28229046(-) A-I      intronic
chr1:28235191(-) A-I      intronic
chr1:28225195(-) A-I      intronic
chr1:28234742(-) A-I      intronic
chr1:28231394(-) A-I      intronic
chr1:28237694(-) A-I      intronic
chr1:28229659(-) A-I      intronic
chr1:28231243(-) A-I      intronic
chr1:28230588(-) A-I      intronic
chr1:28230064(-) A-I      intronic
chr1:28233143(-) A-I      intronic
chr1:28228050(-) A-I      intronic
chr1:28233077(-) A-I      intronic
chr1:28230148(-) A-I      intronic
chr1:28235185(-) A-I      intronic
chr1:28239561(-) A-I      intronic
chr1:28239641(-) A-I      intronic
chr1:28230615(-) A-I      intronic
chr1:28225221(-) A-I      intronic
chr1:28230086(-) A-I      intronic
chr1:28236016(-) A-I      intronic
chr1:28239526(-) A-I      intronic
chr1:28225348(-) A-I      intronic
chr1:28232057(-) A-I      intronic
chr1:28234374(-) A-I      intronic
chr1:28230167(-) A-I      intronic
chr1:28233073(-) A-I      intronic
chr1:28230183(-) A-I      intronic
chr1:28229686(-) A-I      intronic
chr1:28228868(-) A-I      intronic
chr1:28237644(-) A-I      intronic
chr1:28230067(-) A-I      intronic
chr1:28232646(-) A-I      intronic
chr1:28229616(-) A-I      intronic
chr1:28232429(-) A-I      intronic
chr1:28228038(-) A-I      intronic
chr1:28225844(-) A-I      intronic
chr1:28230073(-) A-I      intronic
chr1:28235146(-) A-I      intronic
chr1:28225273(-) A-I      intronic
chr1:28233140(-) A-I      intronic
chr1:28229237(-) A-I      intronic
chr1:28228821(-) A-I      intronic
chr1:28239691(-) A-I      intronic
chr1:28233117(-) A-I      intronic
chr1:28231357(-) A-I      intronic
chr1:28225892(-) A-I      intronic
chr1:28225205(-) A-I      intronic
chr1:28232869(-) A-I      intronic
chr1:28229628(-) A-I      intronic
chr1:28222796(-) A-I      intronic
chr1:28225638(-) A-I      intronic
chr1:28239540(-) A-I      intronic
chr1:28239549(-) A-I      intronic
chr1:28228047(-) A-I      intronic
chr1:28231996(-) A-I      intronic
chr1:28240183(-) A-I      intronic
chr1:28234892(-) A-I      intronic
chr1:28229998(-) A-I      intronic
chr1:28232061(-) A-I      intronic
chr1:28232029(-) A-I      intronic
chr1:28236218(-) A-I      intronic
chr1:28233167(-) A-I      intronic
chr1:28225666(-) A-I      intronic
chr1:28226760(-) A-I      intronic
chr1:28225155(-) A-I      intronic
chr1:28232839(-) A-I      intronic
chr1:28233079(-) A-I      intronic
chr1:28230147(-) A-I      intronic
chr1:28236051(-) A-I      intronic
chr1:28232943(-) A-I      intronic
chr1:28226394(-) A-I      intronic
chr1:28234457(-) A-I      intronic
chr1:28225934(-) A-I      intronic
chr1:28230612(-) A-I      intronic
chr1:28225263(-) A-I      intronic
chr1:28226751(-) A-I      intronic
chr1:28230106(-) A-I      intronic
chr1:28232958(-) A-I      intronic
chr1:28228968(-) A-I      intronic
chr1:28225302(-) A-I      intronic
chr1:28232678(-) A-I      intronic
chr1:28233101(-) A-I      intronic
chr1:28228370(-) A-I      intronic
chr1:28232333(-) A-I      intronic
chr1:28226652(-) A-I      intronic
chr1:28225850(-) A-I      intronic
chr1:28229579(-) A-I      intronic
chr1:28229517(-) A-I      intronic
chr1:28231252(-) A-I      intronic
chr1:28221070(-) A-I      intronic
chr1:28231929(-) A-I      intronic
chr1:28239759(-) A-I      intronic
chr1:28230593(-) A-I      intronic
chr1:28230208(-) A-I      intronic
chr1:28225086(-) A-I      intronic
chr1:28232769(-) A-I      intronic
chr1:28234514(-) A-I      intronic
chr1:28230589(-) A-I      intronic
chr1:28229634(-) A-I      intronic
chr1:28226895(-) A-I      intronic
chr1:28224646(-) A-I      intronic
chr1:28238591(-) A-I      intronic
chr1:28236103(-) A-I      intronic
chr1:28222819(-) A-I      intronic
chr1:28228400(-) A-I      intronic
chr1:28231933(-) A-I      intronic
chr1:28232618(-) A-I      intronic
chr1:28239640(-) A-I      intronic
chr1:28226855(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RPA2
chr1:28225155(-) A-G intron -    22484847
chr1:28225195(-) A-G intron -    22484847
chr1:28225205(-) A-G intron -    22484847
chr1:28225273(-) A-G intron -    22484847
chr1:28225274(-) A-G intron -    22484847
chr1:28225348(-) A-G intron -    22484847
chr1:28225468(-) A-G intron -    22484847
chr1:28225830(-) A-G intron -    22484847
chr1:28225844(-) A-G intron -    22484847
chr1:28225892(-) A-G intron -    22484847
chr1:28225933(-) A-G intron -    22484847
chr1:28225934(-) A-G intron -    22484847
chr1:28226747(-) A-G intron -    22484847
chr1:28228370(-) A-G intron -    22484847
chr1:28229513(-) A-G intron -    22484847
chr1:28229517(-) A-G intron -    22484847
chr1:28229526(-) A-G intron -    22484847
chr1:28229543(-) A-G intron -    22484847
chr1:28229578(-) A-G intron -    22484847
chr1:28229579(-) A-G intron -    22484847
chr1:28229581(-) A-G intron -    22484847
chr1:28229613(-) A-G intron -    22484847
chr1:28229634(-) A-G intron -    22484847
chr1:28229643(-) A-G intron -    22484847
chr1:28229659(-) A-G intron -    22484847
chr1:28229686(-) A-G intron -    22484847
chr1:28229704(-) A-G intron -    22484847
chr1:28230067(-) A-G intron -    22484847
chr1:28230147(-) A-G intron -    22484847
chr1:28230167(-) A-G intron -    22484847
chr1:28230183(-) A-G intron -    22484847
chr1:28230500(-) T-C intron -    22484847
chr1:28230588(-) A-G intron -    22484847
chr1:28230589(-) A-G intron -    22484847
chr1:28230615(-) A-G intron -    22484847
chr1:28231929(-) A-G intron -    22484847
chr1:28231945(-) A-G intron -    22484847
chr1:28232053(-) A-G intron -    22484847
chr1:28232061(-) A-G intron -    22484847
chr1:28232333(-) A-G intron -    22484847
chr1:28232429(-) A-G intron -    22484847
chr1:28232630(-) T-G intron -    22484847
chr1:28232678(-) A-G intron -    22484847
chr1:28232684(-) A-G intron -    22484847
chr1:28232769(-) A-G intron -    22484847
chr1:28232869(-) A-G intron -    22484847
chr1:28232977(-) A-G intron -    22484847
chr1:28232981(-) A-G intron -    22484847
chr1:28233018(-) A-G intron -    22484847
chr1:28233073(-) A-G intron -    22484847
chr1:28233079(-) A-G intron -    22484847
chr1:28233101(-) A-G intron -    22484847
chr1:28233140(-) A-G intron -    22484847
chr1:28233143(-) A-G intron -    22484847
chr1:28234457(-) A-G intron -    22484847
chr1:28234840(-) A-G intron -    22484847
chr1:28234860(-) A-G intron -    22484847
chr1:28236218(-) A-G intron -    22484847
chr1:28237561(-) G-A intron -    22484847
chr1:28238591(-) A-G intron -    22484847
chr1:28239934(-) A-G intron -    22484847
chr1:28240060(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RPA2
chr1:28218431-28218432(-) Y 3'UTR//intron       26075521
chr1:28218529-28218530(-) m6A 3'UTR//intron       -
chr1:28233528-28233529(-) m6A CDS       27773535
chr1:28240683-28240684(-) m6A CDS//intron       27773535
chr1:28240946-28240947(-) m6A CDS//intron       24981863
chr1:28240995-28240996(-) m6A 5'UTR//intron       24981863//27371828
chr1:28241151-28241152(-) m6A 5'UTR//CDS       24981863//27371828
chr1:28241157-28241158(-) m6A 5'UTR//CDS       24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3609
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)     -
RPA2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3609
Interactor2: RPA2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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