Detail Information

Basic Information:


  VIRBase ID:  

HHID00073028

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3609:           PPP1R10:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3609 PPP1R10
miRBase
Accession/Entrez ID		 MIMAT0017986 5514
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CAT53//FB19//p99//PNUTS//PP1R10//R111

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3609
rs1201010739 chr7:98881721    C/A
rs1379314154 chr7:98881711    G/T
rs1433840969 chr7:98881723    G/A
rs1360895354 chr7:98881703    A/C
rs955400524 chr7:98881707    A/G
rs955400524 chr7:98881707    A/T

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PPP1R10
chr6:30568461-30568462(-) m6A 3'UTR       24284625//24981863//22575960
chr6:30568559-30568560(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr6:30568582-30568583(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr6:30568627-30568628(-) m6A 3'UTR       24284625//24981863//22608085
chr6:30568671-30568672(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr6:30568715-30568716(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr6:30568733-30568734(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr6:30568797-30568798(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr6:30568937-30568938(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr6:30568979-30568980(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr6:30569003-30569004(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr6:30569036-30569037(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr6:30569081-30569082(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr6:30569096-30569097(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr6:30569113-30569114(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr6:30569287-30569288(-) m6A 3'UTR       24284625//22575960
chr6:30569322-30569323(-) m6A 3'UTR       24284625//22575960
chr6:30569374-30569375(-) m6A CDS       24284625//27371828//22575960
chr6:30569425-30569426(-) m6A CDS       24284625//27371828//27773536//22575960
chr6:30569869-30569870(-) m6A CDS       24284625//27371828//27773536
chr6:30569893-30569894(-) m6A CDS       24284625//24209618//27371828//27773536
chr6:30569941-30569942(-) m6A CDS       24284625//24209618//27371828//27773536
chr6:30570037-30570038(-) m6A CDS       24284625//24209618//25456834//27371828//27773536
chr6:30570127-30570128(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960
chr6:30570226-30570227(-) m6A CDS       24284625//25456834//24981863//28052920//27371828//27773536//22575960
chr6:30570283-30570284(-) m6A CDS       24284625//25456834//27773536
chr6:30570322-30570323(-) m6A CDS       24284625//25456834//27773536
chr6:30570334-30570335(-) m6A CDS       24284625//25456834//27773536
chr6:30571956-30571957(-) m6A CDS//exon       24981863//27773535
chr6:30571973-30571974(-) m6A CDS//exon       24981863//27773535
chr6:30572009-30572010(-) m6A CDS       24981863//27773535
chr6:30572138-30572139(-) m6A CDS       24981863//27773535
chr6:30572172-30572173(-) m6A CDS       24981863//27773535
chr6:30572417-30572418(-) m6A CDS//exon       27773535//27371828//27773536
chr6:30572449-30572450(-) m6A CDS//exon       27773535
chr6:30572464-30572465(-) m6A CDS//exon       27773535
chr6:30572479-30572480(-) m6A CDS//exon       27773535
chr6:30572572-30572573(-) m6A exon//intron       27773535
chr6:30572579-30572580(-) m6A exon//intron       27773535
chr6:30572591-30572592(-) m6A exon//intron       27773535
chr6:30572602-30572603(-) m6A exon//intron       27773535
chr6:30573632-30573633(-) m6A exon//intron       27773535
chr6:30573656-30573657(-) m6A exon//intron       24981863//27773535
chr6:30573937-30573938(-) m6A CDS//exon       24981863//27773535
chr6:30574005-30574006(-) m6A CDS//exon       24981863//27773535//27371828
chr6:30574334-30574335(-) m6A CDS//exon       24981863//27371828
chr6:30574376-30574377(-) m6A CDS//exon       24981863//27371828//22575960
chr6:30576568-30576569(-) m6A CDS       27773535
chr6:30576635-30576636(-) m6A CDS       27773535
chr6:30576666-30576667(-) m6A CDS       27773535
chr6:30576878-30576879(-) m6A CDS       27773535
chr6:30576892-30576893(-) m6A CDS       27773535
chr6:30584385-30584386(-) m6A 5'UTR//exon       24284625//24981863//27773535//22608085
chr6:30584466-30584467(-) m6A 5'UTR//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr6:30584515-30584516(-) m6A 5'UTR//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr6:30584563-30584564(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:30584585-30584586(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:30584667-30584668(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:30584726-30584727(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr6:30584732-30584733(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr6:30584752-30584753(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr6:30586345-30586346(-) m6A exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3609
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)     -
PPP1R10
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3609
Interactor2: PPP1R10

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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