Detail Information

Basic Information:


  VIRBase ID:  

HHID00073015

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3609:           GNS:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3609 GNS
miRBase
Accession/Entrez ID		 MIMAT0017986 2799
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - G6S

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3609
rs1201010739 chr7:98881721    C/A
rs1379314154 chr7:98881711    G/T
rs1433840969 chr7:98881723    G/A
rs1360895354 chr7:98881703    A/C
rs955400524 chr7:98881707    A/G
rs955400524 chr7:98881707    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GNS
chr12:65120406(-) A-I      intronic
chr12:65135204(-) A-I      intronic
chr12:65120428(-) A-I      intronic
chr12:65108510(-) A-I      3'UTR
chr12:65131918(-) A-I      intronic
chr12:65107667(-) A-I      3'UTR
chr12:65131928(-) A-I      intronic
chr12:65107686(-) A-I      3'UTR
chr12:65107668(-) A-I      3'UTR
chr12:65107655(-) A-I      3'UTR
chr12:65107669(-) A-I      3'UTR
chr12:65109290(-) A-I      3'UTR
chr12:65109166(-) A-I      3'UTR
chr12:65109150(-) A-I      3'UTR
chr12:65109149(-) A-I      3'UTR
chr12:65135190(-) A-I      intronic
chr12:65135177(-) A-I      intronic
chr12:65145644(-) A-I      intronic
chr12:65145646(-) A-I      intronic
chr12:65135173(-) A-I      intronic
chr12:65132557(-) A-I      intronic
chr12:65132552(-) A-I      intronic
chr12:65125606(-) A-I      intronic
chr12:65149230(-) A-I      intronic
chr12:65132492(-) A-I      intronic
chr12:65131862(-) A-I      intronic
chr12:65128664(-) A-I      intronic
chr12:65126956(-) A-I      intronic
chr12:65126978(-) A-I      intronic
chr12:65124929(-) A-I      intronic
chr12:65126446(-) A-I      intronic
chr12:65150766(-) A-I      intronic
chr12:65126522(-) A-I      intronic
chr12:65125654(-) A-I      intronic
chr12:65128838(-) A-I      intronic
chr12:65126966(-) A-I      intronic
chr12:65124935(-) A-I      intronic
chr12:65143171(-) A-I      intronic
chr12:65126959(-) A-I      intronic
chr12:65121836(-) A-I      intronic
chr12:65126459(-) A-I      intronic
chr12:65131863(-) A-I      intronic
chr12:65126352(-) A-I      intronic
chr12:65131875(-) A-I      intronic
chr12:65125669(-) A-I      intronic
chr12:65126513(-) A-I      intronic
chr12:65126580(-) A-I      intronic
chr12:65131882(-) A-I      intronic
chr12:65143327(-) A-I      intronic
chr12:65125659(-) A-I      intronic
chr12:65143269(-) A-I      intronic
chr12:65142848(-) A-I      intronic
chr12:65125843(-) A-I      intronic
chr12:65124959(-) A-I      intronic
chr12:65142900(-) A-I      intronic
chr12:65131958(-) A-I      intronic
chr12:65131963(-) A-I      intronic
chr12:65131967(-) A-I      intronic
chr12:65125668(-) A-I      intronic
chr12:65132008(-) A-I      intronic
chr12:65128640(-) A-I      intronic
chr12:65124968(-) A-I      intronic
chr12:65144208(-) A-I      intronic
chr12:65135316(-) A-I      intronic
chr12:65132511(-) A-I      intronic
chr12:65124972(-) A-I      intronic
chr12:65132036(-) A-I      intronic
chr12:65135317(-) A-I      intronic
chr12:65135311(-) A-I      intronic
chr12:65142083(-) A-I      intronic
chr12:65144107(-) A-I      intronic
chr12:65126996(-) A-I      intronic
chr12:65142914(-) A-I      intronic
chr12:65142830(-) A-I      intronic
chr12:65143777(-) A-I      intronic
chr12:65128769(-) A-I      intronic
chr12:65150847(-) A-I      intronic
chr12:65120555(-) A-I      intronic
chr12:65148638(-) A-I      intronic
chr12:65152284(-) A-I      intronic
chr12:65149668(-) A-I      intronic
chr12:65142106(-) A-I      intronic
chr12:65121800(-) A-I      intronic
chr12:65144680(-) A-I      intronic
chr12:65132348(-) A-I      intronic
chr12:65120413(-) A-I      intronic
chr12:65124891(-) A-I      intronic
chr12:65128638(-) A-I      intronic
chr12:65126983(-) A-I      intronic
chr12:65135095(-) A-I      intronic
chr12:65135338(-) A-I      intronic
chr12:65119514(-) A-I      intronic
chr12:65127034(-) A-I      intronic
chr12:65149273(-) A-I      intronic
chr12:65125864(-) A-I      intronic
chr12:65132517(-) A-I      intronic
chr12:65144235(-) A-I      intronic
chr12:65142212(-) A-I      intronic
chr12:65135929(-) A-I      intronic
chr12:65135838(-) A-I      intronic
chr12:65149276(-) A-I      intronic
chr12:65109056(-) A-I      3'UTR
chr12:65109259(-) A-I      3'UTR
chr12:65109042(-) A-I      3'UTR
chr12:65109131(-) A-I      3'UTR
chr12:65109140(-) A-I      3'UTR
chr12:65109125(-) A-I      3'UTR
chr12:65109073(-) A-I      3'UTR
chr12:65109077(-) A-I      3'UTR
chr12:65109186(-) A-I      3'UTR
chr12:65109176(-) A-I      3'UTR
chr12:65109117(-) A-I      3'UTR
chr12:65109284(-) A-I      3'UTR
chr12:65109170(-) A-I      3'UTR
chr12:65109134(-) A-I      3'UTR
chr12:65109254(-) A-I      3'UTR
chr12:65109251(-) A-I      3'UTR
chr12:65109241(-) A-I      3'UTR
chr12:65109235(-) A-I      3'UTR
chr12:65109216(-) A-I      3'UTR
chr12:65109160(-) A-I      3'UTR
chr12:65109215(-) A-I      3'UTR
chr12:65132342(-) A-I      intronic
chr12:65128775(-) A-I      intronic
chr12:65135087(-) A-I      intronic
chr12:65145722(-) A-I      intronic
chr12:65144465(-) A-I      intronic
chr12:65144480(-) A-I      intronic
chr12:65143991(-) A-I      intronic
chr12:65121164(-) A-I      intronic
chr12:65126076(-) A-I      intronic
chr12:65128827(-) A-I      intronic
chr12:65149632(-) A-I      intronic
chr12:65144449(-) A-I      intronic
chr12:65144574(-) A-I      intronic
chr12:65131972(-) A-I      intronic
chr12:65142113(-) A-I      intronic
chr12:65126630(-) A-I      intronic
chr12:65150873(-) A-I      intronic
chr12:65131965(-) A-I      intronic
chr12:65125587(-) A-I      intronic
chr12:65135151(-) A-I      intronic
chr12:65125877(-) A-I      intronic
chr12:65126086(-) A-I      intronic
chr12:65135203(-) A-I      intronic
chr12:65125639(-) A-I      intronic
chr12:65121770(-) A-I      intronic
chr12:65126015(-) A-I      intronic
chr12:65132584(-) A-I      intronic
chr12:65124989(-) A-I      intronic
chr12:65144672(-) A-I      intronic
chr12:65128767(-) A-I      intronic
chr12:65127031(-) A-I      intronic
chr12:65128639(-) A-I      intronic
chr12:65143995(-) A-I      intronic
chr12:65125863(-) A-I      intronic
chr12:65144100(-) A-I      intronic
chr12:65126872(-) A-I      intronic
chr12:65145656(-) A-I      intronic
chr12:65131969(-) A-I      intronic
chr12:65127032(-) A-I      intronic
chr12:65149629(-) A-I      intronic
chr12:65128384(-) A-I      intronic
chr12:65152331(-) A-I      intronic
chr12:65132363(-) A-I      intronic
chr12:65120386(-) A-I      intronic
chr12:65126220(-) A-I      intronic
chr12:65152214(-) A-I      intronic
chr12:65144517(-) A-I      intronic
chr12:65132481(-) A-I      intronic
chr12:65149123(-) A-I      intronic
chr12:65132510(-) A-I      intronic
chr12:65126887(-) A-I      intronic
chr12:65145705(-) A-I      intronic
chr12:65128715(-) A-I      intronic
chr12:65135969(-) A-I      intronic
chr12:65128779(-) A-I      intronic
chr12:65124922(-) A-I      intronic
chr12:65149597(-) A-I      intronic
chr12:65126379(-) A-I      intronic
chr12:65144635(-) A-I      intronic
chr12:65149178(-) A-I      intronic
chr12:65128693(-) A-I      intronic
chr12:65144573(-) A-I      intronic
chr12:65149250(-) A-I      intronic
chr12:65135138(-) A-I      intronic
chr12:65128626(-) A-I      intronic
chr12:65126545(-) A-I      intronic
chr12:65126337(-) A-I      intronic
chr12:65150850(-) A-I      intronic
chr12:65125682(-) A-I      intronic
chr12:65125594(-) A-I      intronic
chr12:65125709(-) A-I      intronic
chr12:65126660(-) A-I      intronic
chr12:65150883(-) A-I      intronic
chr12:65150912(-) A-I      intronic
chr12:65124995(-) A-I      intronic
chr12:65143955(-) A-I      intronic
chr12:65132358(-) A-I      intronic
chr12:65144604(-) A-I      intronic
chr12:65145651(-) A-I      intronic
chr12:65131954(-) A-I      intronic
chr12:65107876(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GNS
chr12:65125587(-) A-G intron -    22484847
chr12:65128626(-) A-G intron -    22484847
chr12:65116066(-) T-C intron -    22484847
chr12:65118476(-) T-C intron -    22484847
chr12:65120555(-) A-G intron -    22484847
chr12:65127031(-) A-G intron -    22484847
chr12:65127032(-) A-G intron -    22484847
chr12:65128638(-) A-G intron -    22484847
chr12:65128639(-) A-G intron -    22484847
chr12:65128767(-) A-G intron -    22484847
chr12:65128769(-) A-G intron -    22484847
chr12:65128775(-) A-G intron -    22484847
chr12:65131969(-) A-G intron -    22484847
chr12:65131972(-) A-G intron -    22484847
chr12:65132342(-) A-G intron -    22484847
chr12:65132363(-) A-G intron -    22484847
chr12:65132517(-) A-G intron -    22484847
chr12:65143955(-) A-G intron -    22484847
chr12:65143991(-) A-G intron -    22484847
chr12:65143995(-) A-G intron -    22484847
chr12:65144672(-) A-G intron -    22484847
chr12:65144680(-) A-G intron -    22484847
chr12:65149250(-) A-G intron -    22484847
chr12:65149273(-) A-G intron -    22484847
chr12:65149608(-) T-C intron -    22484847
chr12:65149668(-) A-G intron -    22484847
chr12:65150883(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GNS
chr12:65108118-65108119(-) Y 3'UTR       25219674
chr12:65108684-65108685(-) m6A 3'UTR       26404942
chr12:65108701-65108702(-) m6A 3'UTR       26404942
chr12:65109615-65109616(-) m6A 3'UTR       26404942
chr12:65109628-65109629(-) m6A 3'UTR       26404942
chr12:65110004-65110005(-) m6A 3'UTR       26404942
chr12:65110086-65110087(-) Cm 3'UTR       -
chr12:65110101-65110102(-) m6A 3'UTR       24284625//24981863//26404942//22575960
chr12:65110141-65110142(-) m6A 3'UTR       24284625//26404942//22575960//22608085
chr12:65110149-65110150(-) m6A 3'UTR       24284625//26404942//22575960//22608085
chr12:65110159-65110160(-) m6A 3'UTR       24284625//24981863//26404942//22575960//22608085
chr12:65110189-65110190(-) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085
chr12:65110202-65110203(-) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085
chr12:65110282-65110283(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr12:65110338-65110339(-) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085
chr12:65110345-65110346(-) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085
chr12:65110432-65110433(-) m6A 3'UTR//exon       24284625//24209618//24981863//22608085
chr12:65113870-65113871(-) m6A CDS//exon       26404942
chr12:65113894-65113895(-) m6A CDS//exon       26404942
chr12:65113901-65113902(-) m6A CDS//exon       26404942
chr12:65113924-65113925(-) m6A CDS//exon       26404942
chr12:65113930-65113931(-) m6A CDS//exon       26404942
chr12:65122770-65122771(-) m6A CDS//exon//intron       26404942
chr12:65122796-65122797(-) m6A CDS//exon//intron       26404942
chr12:65133177-65133178(-) m6A CDS//exon       26404942
chr12:65136939-65136940(-) m6A CDS//exon       22575960
chr12:65136945-65136946(-) m6A CDS//exon       22575960
chr12:65136997-65136998(-) m6A CDS//exon       22575960
chr12:65137062-65137063(-) m6A CDS//exon       22575960
chr12:65137071-65137072(-) m6A CDS//exon       22575960
chr12:65138607-65138608(-) m6A CDS//exon       22575960
chr12:65138619-65138620(-) m6A CDS//exon       22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3609
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)     -
GNS
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HeLa-S3 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3609
Interactor2: GNS

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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