Basic Information:

  VIRBase ID:  

HHID00073013

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3609:  MIMAT0017986          DNAH9:  NM_004662     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3609	DNAH9
miRBase Accession/Entrez ID	MIMAT0017986	1770
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	CILD40//DNAH17L//Dnahc9//DNEL1//DYH9//HL-20//HL20

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3609	rs1201010739 chr7:98881721    C/A rs1379314154 chr7:98881711    G/T rs1433840969 chr7:98881723    G/A rs1360895354 chr7:98881703    A/C rs955400524 chr7:98881707    A/G rs955400524 chr7:98881707    A/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DNAH9	chr17:11701586(+) A-I      intronic chr17:11651609(+) A-I      intronic chr17:11651627(+) A-I      intronic chr17:11701587(+) A-I      intronic chr17:11701598(+) A-I      intronic chr17:11863519(+) A-I      intronic chr17:11721531(+) A-I      intronic chr17:11721530(+) A-I      intronic chr17:11682134(+) A-I      intronic chr17:11682133(+) A-I      intronic chr17:11781303(+) A-I      intronic chr17:11681544(+) A-I      intronic chr17:11737540(+) A-I      intronic chr17:11846818(+) A-I      intronic chr17:11846832(+) A-I      intronic chr17:11682306(+) A-I      intronic chr17:11591203(+) A-I      intronic chr17:11541763(+) A-I      intronic chr17:11846982(+) A-I      intronic chr17:11516684(+) A-I      intronic chr17:11651523(+) A-I      intronic chr17:11789670(+) A-I      intronic chr17:11816356(+) A-I      intronic chr17:11780058(+) A-I      intronic chr17:11701635(+) A-I      intronic chr17:11523253(+) A-I      intronic chr17:11591230(+) A-I      intronic chr17:11846779(+) A-I      intronic chr17:11846807(+) A-I      intronic chr17:11701700(+) A-I      intronic chr17:11533629(+) A-I      intronic chr17:11651631(+) A-I      intronic chr17:11682312(+) A-I      intronic chr17:11846793(+) A-I      intronic chr17:11533656(+) A-I      intronic chr17:11846740(+) A-I      intronic chr17:11509111(+) A-I      intronic chr17:11651639(+) A-I      intronic chr17:11780518(+) A-I      intronic chr17:11550620(+) A-I      intronic chr17:11684988(+) A-I      intronic chr17:11652433(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DNAH9	chr17:11501868-11501869(+) m6A CDS//exon       - chr17:11501902-11501903(+) m6A CDS//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3609	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Colon cancer cell line (LIM1863)     -
	DNAH9	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3609
Interactor2: DNAH9

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	CDS
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.