Detail Information

Basic Information:


  VIRBase ID:  

HHID00072979

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3607-3p NIPA2
miRBase
Accession/Entrez ID		 MIMAT0017985 81614
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - SLC57A2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NIPA2
chr15:23026292(-) A-I      intronic
chr15:23019577(-) A-I      intronic
chr15:23026417(-) A-I      intronic
chr15:23008016(-) A-I      intronic
chr15:23019055(-) A-I      intronic
chr15:23024407(-) A-I      intronic
chr15:23026405(-) A-I      intronic
chr15:23026267(-) A-I      intronic
chr15:23008065(-) A-I      intronic
chr15:23026270(-) A-I      intronic
chr15:23026268(-) A-I      intronic
chr15:23008026(-) A-I      intronic
chr15:23026398(-) A-I      intronic
chr15:23025504(-) A-I      intronic
chr15:23014041(-) A-I      intronic
chr15:23026413(-) A-I      intronic
chr15:23008081(-) A-I      intronic
chr15:23025430(-) A-I      intronic
chr15:23014145(-) A-I      intronic
chr15:23026375(-) A-I      intronic
chr15:23029608(-) A-I      intronic
chr15:23024291(-) A-I      intronic
chr15:23024302(-) A-I      intronic
chr15:23026510(-) A-I      intronic
chr15:23024376(-) A-I      intronic
chr15:23024381(-) A-I      intronic
chr15:23024420(-) A-I      intronic
chr15:23025404(-) A-I      intronic
chr15:23025464(-) A-I      intronic
chr15:23018484(-) A-I      intronic
chr15:23018469(-) A-I      intronic
chr15:23018453(-) A-I      intronic
chr15:23018400(-) A-I      intronic
chr15:23013502(-) A-I      intronic
chr15:23014938(-) A-I      intronic
chr15:23014717(-) A-I      intronic
chr15:23014123(-) A-I      intronic
chr15:23014015(-) A-I      intronic
chr15:23018475(-) A-I      intronic
chr15:23014005(-) A-I      intronic
chr15:23014001(-) A-I      intronic
chr15:23013646(-) A-I      intronic
chr15:23013636(-) A-I      intronic
chr15:23013634(-) A-I      intronic
chr15:23018802(-) A-I      intronic
chr15:23007837(-) A-I      intronic
chr15:23017843(-) A-I      intronic
chr15:23015797(-) A-I      intronic
chr15:23019133(-) A-I      intronic
chr15:23013515(-) A-I      intronic
chr15:23013514(-) A-I      intronic
chr15:23007744(-) A-I      intronic
chr15:23007703(-) A-I      intronic
chr15:23015751(-) A-I      intronic
chr15:23007689(-) A-I      intronic
chr15:23017712(-) A-I      intronic
chr15:23025486(-) A-I      intronic
chr15:23025940(-) A-I      intronic
chr15:23017762(-) A-I      intronic
chr15:23025973(-) A-I      intronic
chr15:23026012(-) A-I      intronic
chr15:23026287(-) A-I      intronic
chr15:23008080(-) A-I      intronic
chr15:23026358(-) A-I      intronic
chr15:23026363(-) A-I      intronic
chr15:23026367(-) A-I      intronic
chr15:23026526(-) A-I      intronic
chr15:23026533(-) A-I      intronic
chr15:23018579(-) A-I      intronic
chr15:23029656(-) A-I      intronic
chr15:23030503(-) A-I      intronic
chr15:23030507(-) A-I      intronic
chr15:23030508(-) A-I      intronic
chr15:23032886(-) A-I      intronic
chr15:23033035(-) A-I      intronic
chr15:23007680(-) A-I      intronic
chr15:23007662(-) A-I      intronic
chr15:23007661(-) A-I      intronic
chr15:23007637(-) A-I      intronic
chr15:23007622(-) A-I      intronic
chr15:23007595(-) A-I      intronic
chr15:23007580(-) A-I      intronic
chr15:23017841(-) A-I      intronic
chr15:23019430(-) A-I      intronic
chr15:23028593(-) A-I      intronic
chr15:23018732(-) A-I      intronic
chr15:23019565(-) A-I      intronic
chr15:23019060(-) A-I      intronic
chr15:23019057(-) A-I      intronic
chr15:23019079(-) A-I      intronic
chr15:23019111(-) A-I      intronic
chr15:23019431(-) A-I      intronic
chr15:23018532(-) A-I      intronic
chr15:23019553(-) A-I      intronic
chr15:23019615(-) A-I      intronic
chr15:23017772(-) A-I      intronic
chr15:23019655(-) A-I      intronic
chr15:23018681(-) A-I      intronic
chr15:23013577(-) A-I      intronic
chr15:23014073(-) A-I      intronic
chr15:23026323(-) A-I      intronic
chr15:23007729(-) A-I      intronic
chr15:23017847(-) A-I      intronic
chr15:23019671(-) A-I      intronic
chr15:23026411(-) A-I      intronic
chr15:23012868(-) A-I      intronic
chr15:23029276(-) A-I      intronic
chr15:23019101(-) A-I      intronic
chr15:23019051(-) A-I      intronic
chr15:23015799(-) A-I      intronic
chr15:23026484(-) A-I      intronic
chr15:23025439(-) A-I      intronic
chr15:23024402(-) A-I      intronic
chr15:23019528(-) A-I      intronic
chr15:23029097(-) A-I      intronic
chr15:23028635(-) A-I      intronic
chr15:23018482(-) A-I      intronic
chr15:23019472(-) A-I      intronic
chr15:23018339(-) A-I      intronic
chr15:23023428(-) A-I      intronic
chr15:23013591(-) A-I      intronic
chr15:23008175(-) A-I      intronic
chr15:23012932(-) A-I      intronic
chr15:23025424(-) A-I      intronic
chr15:23030176(-) A-I      intronic
chr15:23024394(-) A-I      intronic
chr15:23025395(-) A-I      intronic
chr15:23030289(-) A-I      intronic
chr15:23018485(-) A-I      intronic
chr15:23026031(-) A-I      5'UTR
chr15:23026065(-) A-I      5'UTR
chr15:23026030(-) A-I      5'UTR
chr15:23026628(-) A-I      intronic
chr15:23012968(-) A-I      intronic
chr15:23008145(-) A-I      intronic
chr15:23019471(-) A-I      intronic
chr15:23029288(-) A-I      intronic
chr15:23028504(-) A-I      intronic
chr15:23025982(-) A-I      intronic
chr15:23029224(-) A-I      intronic
chr15:23018800(-) A-I      intronic
chr15:23018753(-) A-I      intronic
chr15:23018402(-) A-I      intronic
chr15:23026402(-) A-I      intronic
chr15:23026509(-) A-I      intronic
chr15:23015346(-) A-I      intronic
chr15:23024499(-) A-I      intronic
chr15:23019140(-) A-I      intronic
chr15:23018410(-) A-I      intronic
chr15:23008077(-) A-I      intronic
chr15:23017858(-) A-I      intronic
chr15:23019595(-) A-I      intronic
chr15:23015310(-) A-I      intronic
chr15:23013600(-) A-I      intronic
chr15:23026432(-) A-I      intronic
chr15:23017719(-) A-I      intronic
chr15:23014080(-) A-I      intronic
chr15:23008113(-) A-I      intronic
chr15:23017910(-) A-I      intronic
chr15:23026414(-) A-I      intronic
chr15:23015352(-) A-I      intronic
chr15:23015342(-) A-I      intronic
chr15:23019188(-) A-I      intronic
chr15:23019512(-) A-I      intronic
chr15:23018767(-) A-I      intronic
chr15:23014722(-) A-I      intronic
chr15:23007934(-) A-I      intronic
chr15:23019075(-) A-I      intronic
chr15:23025421(-) A-I      intronic
chr15:23028634(-) A-I      intronic
chr15:23030333(-) A-I      intronic
chr15:23024353(-) A-I      intronic
chr15:23024219(-) A-I      intronic
chr15:23029805(-) A-I      intronic
chr15:23019212(-) A-I      intronic
chr15:23026465(-) A-I      intronic
chr15:23029136(-) A-I      intronic
chr15:23019509(-) A-I      intronic
chr15:23031442(-) A-I      intronic
chr15:23032992(-) A-I      intronic
chr15:23007594(-) A-I      intronic
chr15:23017771(-) A-I      intronic
chr15:23029226(-) A-I      intronic
chr15:23025552(-) A-I      intronic
chr15:23029337(-) A-I      intronic
chr15:23019594(-) A-I      intronic
chr15:23024452(-) A-I      intronic
chr15:23018928(-) A-I      intronic
chr15:23019219(-) A-I      intronic
chr15:23023298(-) A-I      intronic
chr15:23018841(-) A-I      intronic
chr15:23023323(-) A-I      intronic
chr15:23025500(-) A-I      intronic
chr15:23029324(-) A-I      intronic
chr15:23013594(-) A-I      intronic
chr15:23029236(-) A-I      intronic
chr15:23029110(-) A-I      intronic
chr15:23012908(-) A-I      intronic
chr15:23013695(-) A-I      intronic
chr15:23031511(-) A-I      intronic
chr15:23019074(-) A-I      intronic
chr15:23023320(-) A-I      intronic
chr15:23032982(-) A-I      intronic
chr15:23024404(-) A-I      intronic
chr15:23018401(-) A-I      intronic
chr15:23013649(-) A-I      intronic
chr15:23025477(-) A-I      intronic
chr15:23025382(-) A-I      intronic
chr15:23019555(-) A-I      intronic
chr15:23018741(-) A-I      intronic
chr15:23017723(-) A-I      intronic
chr15:23025200(-) A-I      intronic
chr15:23024363(-) A-I      intronic
chr15:23020759(-) A-I      intronic
chr15:23017672(-) A-I      intronic
chr15:23029353(-) A-I      intronic
chr15:23019106(-) A-I      intronic
chr15:23026337(-) A-I      intronic
chr15:23018840(-) A-I      intronic
chr15:23018483(-) A-I      intronic
chr15:23029170(-) A-I      intronic
chr15:23026415(-) A-I      intronic
chr15:23025478(-) A-I      intronic
chr15:23015243(-) A-I      intronic
chr15:23008137(-) A-I      intronic
chr15:23018860(-) A-I      intronic
chr15:23025326(-) A-I      intronic
chr15:23029714(-) A-I      intronic
chr15:23013696(-) A-I      intronic
chr15:23026416(-) A-I      intronic
chr15:23018433(-) A-I      intronic
chr15:23026332(-) A-I      intronic
chr15:23007845(-) A-I      intronic
chr15:23028460(-) A-I      intronic
chr15:23015489(-) A-I      intronic
chr15:23014146(-) A-I      intronic
chr15:23014832(-) A-I      intronic
chr15:23032874(-) A-I      intronic
chr15:23028594(-) A-I      intronic
chr15:23015703(-) A-I      intronic
chr15:23028648(-) A-I      intronic
chr15:23015742(-) A-I      intronic
chr15:23026488(-) A-I      intronic
chr15:23018488(-) A-I      intronic
chr15:23008170(-) A-I      intronic
chr15:23007739(-) A-I      intronic
chr15:23018669(-) A-I      intronic
chr15:23018969(-) A-I      intronic
chr15:23019166(-) A-I      intronic
chr15:23018758(-) A-I      intronic
chr15:23029161(-) A-I      intronic
chr15:23019620(-) A-I      intronic
chr15:23026516(-) A-I      intronic
chr15:23025928(-) A-I      intronic
chr15:23026311(-) A-I      intronic
chr15:23029827(-) A-I      intronic
chr15:23028691(-) A-I      intronic
chr15:23023254(-) A-I      intronic
chr15:23025503(-) A-I      intronic
chr15:23030551(-) A-I      intronic
chr15:23025438(-) A-I      intronic
chr15:23018691(-) A-I      intronic
chr15:23018442(-) A-I      intronic
chr15:23029398(-) A-I      intronic
chr15:23030350(-) A-I      intronic
chr15:23018443(-) A-I      intronic
chr15:23015798(-) A-I      intronic
chr15:23026100(-) A-I      5'UTR
chr15:23026090(-) A-I      5'UTR
chr15:23026064(-) A-I      5'UTR
chr15:23029841(-) A-I      5'UTR
chr15:23026025(-) A-I      5'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NIPA2
chr15:23026465(-) A-I intron -    22327324
chr15:23005380(-) T-G exon 3'UTR    21725310
chr15:23007594(-) A-G intron -    22484847
chr15:23008081(-) A-G intron -    22484847
chr15:23013611(-) T-C intron -    22484847
chr15:23015751(-) A-G intron -    22484847
chr15:23017712(-) A-G intron -    22484847
chr15:23017719(-) A-G intron -    22484847
chr15:23017762(-) A-G intron -    22484847
chr15:23017771(-) A-G intron -    22484847
chr15:23017772(-) A-G intron -    22484847
chr15:23017841(-) A-G intron -    22484847
chr15:23017843(-) A-G intron -    22484847
chr15:23018741(-) A-G intron -    22484847
chr15:23019212(-) A-G intron -    22484847
chr15:23025552(-) A-G intron -    22484847
chr15:23026064(-) A-G exon 5'UTR    22484847
chr15:23026065(-) A-G exon 5'UTR    22484847
chr15:23026332(-) A-G intron -    22484847
chr15:23026337(-) A-G intron -    22484847
chr15:23026465(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NIPA2
chr15:23005387-23005388(-) Y 3'UTR       26075521
chr15:23005678-23005679(-) m6A 3'UTR       27773535
chr15:23005694-23005695(-) m6A 3'UTR       27773535
chr15:23006274-23006275(-) m6A CDS       24981863
chr15:23006407-23006408(-) Y CDS       26075521
chr15:23006773-23006774(-) m6A CDS       24284625//24981863//22608085
chr15:23006777-23006778(-) m6A CDS       22575960
chr15:23006781-23006782(-) m6A CDS       24284625//24981863//22608085
chr15:23012314-23012315(-) m6A CDS       24284625
chr15:23034231-23034232(-) m6A 5'UTR//exon       25456834//24981863//27371828//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3607-3p
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Microvesicle Fibroblasts|Mesenchymal stem cells     -
NIPA2
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-3607-3p
Gemcitabine 60750 Drug interaction    RC00008306
5-Fluorouracil 3385 Drug interaction    RC00008305
cis-Diaminedichloroplatinum 2767 Drug interaction    RC00008304
N-(3-(5-Chloro-1H-pyrrolo[2,3-b]pyridine-3-carbonyl)-2,4-difluorophenyl)propane-1-sulfonamide 24180719 Drug interaction    RC00008307
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-3607-3p
N-(3-(5-Chloro-1H-pyrrolo[2,3-b]pyridine-3-carbonyl)-2,4-difluorophenyl)propane-1-sulfonamide 24180719       26456124

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3607-3p
Interactor2: NIPA2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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