Detail Information

Basic Information:


  VIRBase ID:  

HHID00072968

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3607-3p WDFY1
miRBase
Accession/Entrez ID		 MIMAT0017985 57590
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - FENS-1//FENS1//WDF1//ZFYVE17

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR WDFY1
chr2:224762339(-) A-I      intronic
chr2:224764319(-) A-I      intronic
chr2:224763305(-) A-I      intronic
chr2:224764381(-) A-I      intronic
chr2:224764462(-) A-I      intronic
chr2:224763293(-) A-I      intronic
chr2:224763318(-) A-I      intronic
chr2:224763290(-) A-I      intronic
chr2:224763294(-) A-I      intronic
chr2:224763291(-) A-I      intronic
chr2:224763327(-) A-I      intronic
chr2:224763369(-) A-I      intronic
chr2:224763372(-) A-I      intronic
chr2:224767187(-) A-I      intronic
chr2:224767230(-) A-I      intronic
chr2:224767236(-) A-I      intronic
chr2:224798797(-) A-I      intronic
chr2:224798818(-) A-I      intronic
chr2:224798853(-) A-I      intronic
chr2:224798922(-) A-I      intronic
chr2:224764464(-) A-I      intronic
chr2:224763326(-) A-I      intronic
chr2:224763301(-) A-I      intronic
chr2:224763302(-) A-I      intronic
chr2:224735744(-) A-I      intronic
chr2:224807779(-) A-I      intronic
chr2:224798944(-) A-I      intronic
chr2:224799298(-) A-I      intronic
chr2:224805732(-) A-I      intronic
chr2:224804960(-) A-I      intronic
chr2:224804812(-) A-I      intronic
chr2:224803732(-) A-I      intronic
chr2:224803710(-) A-I      intronic
chr2:224807715(-) A-I      intronic
chr2:224807678(-) A-I      intronic
chr2:224784126(-) A-I      intronic
chr2:224807454(-) A-I      intronic
chr2:224807422(-) A-I      intronic
chr2:224807381(-) A-I      intronic
chr2:224784060(-) A-I      intronic
chr2:224777875(-) A-I      intronic
chr2:224770192(-) A-I      intronic
chr2:224770142(-) A-I      intronic
chr2:224768140(-) A-I      intronic
chr2:224767993(-) A-I      intronic
chr2:224767976(-) A-I      intronic
chr2:224764350(-) A-I      intronic
chr2:224764341(-) A-I      intronic
chr2:224764296(-) A-I      intronic
chr2:224764279(-) A-I      intronic
chr2:224764227(-) A-I      intronic
chr2:224763413(-) A-I      intronic
chr2:224763350(-) A-I      intronic
chr2:224763339(-) A-I      intronic
chr2:224784131(-) A-I      intronic
chr2:224763283(-) A-I      intronic
chr2:224763279(-) A-I      intronic
chr2:224760835(-) A-I      intronic
chr2:224760826(-) A-I      intronic
chr2:224760804(-) A-I      intronic
chr2:224756917(-) A-I      intronic
chr2:224756886(-) A-I      intronic
chr2:224756824(-) A-I      intronic
chr2:224755876(-) A-I      intronic
chr2:224754984(-) A-I      intronic
chr2:224754971(-) A-I      intronic
chr2:224749644(-) A-I      intronic
chr2:224748627(-) A-I      intronic
chr2:224747542(-) A-I      intronic
chr2:224747483(-) A-I      intronic
chr2:224739460(-) A-I      intronic
chr2:224739371(-) A-I      intronic
chr2:224737452(-) A-I      intronic
chr2:224737426(-) A-I      intronic
chr2:224737414(-) A-I      intronic
chr2:224736741(-) A-I      intronic
chr2:224736740(-) A-I      intronic
chr2:224735862(-) A-I      intronic
chr2:224735683(-) A-I      intronic
chr2:224735680(-) A-I      intronic
chr2:224735679(-) A-I      intronic
chr2:224735675(-) A-I      intronic
chr2:224734810(-) A-I      intronic
chr2:224734804(-) A-I      intronic
chr2:224733732(-) A-I      intronic
chr2:224731397(-) A-I      intronic
chr2:224729184(-) A-I      intronic
chr2:224729217(-) A-I      intronic
chr2:224784065(-) A-I      intronic
chr2:224729256(-) A-I      intronic
chr2:224730630(-) A-I      intronic
chr2:224731391(-) A-I      intronic
chr2:224784066(-) A-I      intronic
chr2:224807364(-) A-I      intronic
chr2:224807358(-) A-I      intronic
chr2:224805862(-) A-I      intronic
chr2:224805733(-) A-I      intronic
chr2:224801006(-) A-I      intronic
chr2:224799426(-) A-I      intronic
chr2:224799407(-) A-I      intronic
chr2:224788320(-) A-I      intronic
chr2:224788356(-) A-I      intronic
chr2:224788391(-) A-I      intronic
chr2:224788402(-) A-I      intronic
chr2:224798557(-) A-I      intronic
chr2:224763319(-) A-I      intronic
chr2:224798559(-) A-I      intronic
chr2:224798584(-) A-I      intronic
chr2:224798596(-) A-I      intronic
chr2:224798632(-) A-I      intronic
chr2:224798635(-) A-I      intronic
chr2:224799375(-) A-I      intronic
chr2:224729116(-) A-I      intronic
chr2:224760790(-) A-I      intronic
chr2:224729036(-) A-I      intronic
chr2:224727485(-) A-I      intronic
chr2:224721847(-) A-I      intronic
chr2:224721704(-) A-I      intronic
chr2:224798873(-) A-I      intronic
chr2:224798917(-) A-I      intronic
chr2:224807901(-) A-I      intronic
chr2:224807851(-) A-I      intronic
chr2:224729218(-) A-I      intronic
chr2:224720581(-) A-I      ncRNA
chr2:224736558(-) A-I      intronic
chr2:224730629(-) A-I      intronic
chr2:224807822(-) A-I      intronic
chr2:224798303(-) A-I      intronic
chr2:224733714(-) A-I      intronic
chr2:224793970(-) A-I      intronic
chr2:224804973(-) A-I      intronic
chr2:224798863(-) A-I      intronic
chr2:224733564(-) A-I      intronic
chr2:224804896(-) A-I      intronic
chr2:224731324(-) A-I      intronic
chr2:224798320(-) A-I      intronic
chr2:224769093(-) A-I      intronic
chr2:224799353(-) A-I      intronic
chr2:224798365(-) A-I      intronic
chr2:224763202(-) A-I      intronic
chr2:224747102(-) A-I      intronic
chr2:224764411(-) A-I      intronic
chr2:224807640(-) A-I      intronic
chr2:224763322(-) A-I      intronic
chr2:224756017(-) A-I      intronic
chr2:224756832(-) A-I      intronic
chr2:224789173(-) A-I      intronic
chr2:224763245(-) A-I      intronic
chr2:224725195(-) A-I      intronic
chr2:224804953(-) A-I      intronic
chr2:224756875(-) A-I      intronic
chr2:224749737(-) A-I      intronic
chr2:224725885(-) A-I      intronic
chr2:224749710(-) A-I      intronic
chr2:224799376(-) A-I      intronic
chr2:224768558(-) A-I      intronic
chr2:224799340(-) A-I      intronic
chr2:224799526(-) A-I      intronic
chr2:224722250(-) A-I      intronic
chr2:224730615(-) A-I      intronic
chr2:224734644(-) A-I      intronic
chr2:224721843(-) A-I      intronic
chr2:224735738(-) A-I      intronic
chr2:224763219(-) A-I      intronic
chr2:224725674(-) A-I      intronic
chr2:224798810(-) A-I      intronic
chr2:224798327(-) A-I      intronic
chr2:224798970(-) A-I      intronic
chr2:224763401(-) A-I      intronic
chr2:224807854(-) A-I      intronic
chr2:224735746(-) A-I      intronic
chr2:224784127(-) A-I      intronic
chr2:224735650(-) A-I      intronic
chr2:224730564(-) A-I      intronic
chr2:224756024(-) A-I      intronic
chr2:224753758(-) A-I      intronic
chr2:224795251(-) A-I      intronic
chr2:224749585(-) A-I      intronic
chr2:224800943(-) A-I      intronic
chr2:224786370(-) A-I      intronic
chr2:224749661(-) A-I      intronic
chr2:224798418(-) A-I      intronic
chr2:224735814(-) A-I      intronic
chr2:224807524(-) A-I      intronic
chr2:224723975(-) A-I      intronic
chr2:224804992(-) A-I      intronic
chr2:224760630(-) A-I      intronic
chr2:224735656(-) A-I      intronic
chr2:224736622(-) A-I      intronic
chr2:224760678(-) A-I      intronic
chr2:224768073(-) A-I      intronic
chr2:224729042(-) A-I      intronic
chr2:224735854(-) A-I      intronic
chr2:224795079(-) A-I      intronic
chr2:224804790(-) A-I      intronic
chr2:224731323(-) A-I      intronic
chr2:224730652(-) A-I      intronic
chr2:224805365(-) A-I      intronic
chr2:224798902(-) A-I      intronic
chr2:224764380(-) A-I      intronic
chr2:224724628(-) A-I      intronic
chr2:224756965(-) A-I      intronic
chr2:224724207(-) A-I      intronic
chr2:224734709(-) A-I      intronic
chr2:224781638(-) A-I      intronic
chr2:224798513(-) A-I      intronic
chr2:224806943(-) A-I      intronic
chr2:224755936(-) A-I      intronic
chr2:224735817(-) A-I      intronic
chr2:224807718(-) A-I      intronic
chr2:224768232(-) A-I      intronic
chr2:224751347(-) A-I      intronic
chr2:224805812(-) A-I      intronic
chr2:224763355(-) A-I      intronic
chr2:224763292(-) A-I      intronic
chr2:224751364(-) A-I      intronic
chr2:224768367(-) A-I      intronic
chr2:224753880(-) A-I      intronic
chr2:224722263(-) A-I      intronic
chr2:224763213(-) A-I      intronic
chr2:224798360(-) A-I      intronic
chr2:224783156(-) A-I      intronic
chr2:224735716(-) A-I      intronic
chr2:224803723(-) A-I      intronic
chr2:224731284(-) A-I      intronic
chr2:224798395(-) A-I      intronic
chr2:224769065(-) A-I      intronic
chr2:224768622(-) A-I      intronic
chr2:224748644(-) A-I      intronic
chr2:224755023(-) A-I      intronic
chr2:224800946(-) A-I      intronic
chr2:224768443(-) A-I      intronic
chr2:224788440(-) A-I      intronic
chr2:224803674(-) A-I      intronic
chr2:224749723(-) A-I      intronic
chr2:224756870(-) A-I      intronic
chr2:224760704(-) A-I      intronic
chr2:224768439(-) A-I      intronic
chr2:224798290(-) A-I      intronic
chr2:224750127(-) A-I      intronic
chr2:224746393(-) A-I      intronic
chr2:224770179(-) A-I      intronic
chr2:224768506(-) A-I      intronic
chr2:224798610(-) A-I      intronic
chr2:224731326(-) A-I      intronic
chr2:224735708(-) A-I      intronic
chr2:224728181(-) A-I      intronic
chr2:224747869(-) A-I      intronic
chr2:224732306(-) A-I      intronic
chr2:224805851(-) A-I      intronic
chr2:224760787(-) A-I      intronic
chr2:224725254(-) A-I      intronic
chr2:224789260(-) A-I      intronic
chr2:224807101(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED WDFY1
chr2:224753880(-) A-G intron -    22484847
chr2:224755875(-) A-G intron -    22484847
chr2:224755927(-) A-G intron -    22484847
chr2:224755930(-) A-G intron -    22484847
chr2:224756024(-) A-G intron -    22484847
chr2:224756832(-) A-G intron -    22484847
chr2:224756875(-) A-G intron -    22484847
chr2:224758241(-) A-G intron -    22484847
chr2:224760787(-) A-G intron -    22484847
chr2:224763152(-) A-G intron -    22484847
chr2:224763171(-) A-G intron -    22484847
chr2:224764473(-) C-T intron -    22484847
chr2:224767166(-) A-G intron -    22484847
chr2:224768068(-) A-G intron -    22484847
chr2:224768073(-) A-G intron -    22484847
chr2:224768232(-) A-G intron -    22484847
chr2:224768622(-) A-G intron -    22484847
chr2:224769065(-) A-G intron -    22484847
chr2:224769093(-) A-G intron -    22484847
chr2:224769101(-) A-G intron -    22484847
chr2:224770179(-) A-G intron -    22484847
chr2:224777879(-) A-G intron -    22484847
chr2:224784116(-) A-G intron -    22484847
chr2:224784127(-) A-G intron -    22484847
chr2:224789173(-) A-G intron -    22484847
chr2:224798360(-) A-G intron -    22484847
chr2:224798365(-) A-G intron -    22484847
chr2:224798417(-) A-G intron -    22484847
chr2:224798418(-) A-G intron -    22484847
chr2:224798439(-) A-G intron -    22484847
chr2:224798595(-) A-G intron -    22484847
chr2:224799340(-) A-G intron -    22484847
chr2:224799502(-) A-G intron -    22484847
chr2:224799511(-) A-G intron -    22484847
chr2:224804896(-) A-G intron -    22484847
chr2:224807718(-) A-G intron -    22484847
chr2:224807822(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase WDFY1
chr2:224720585-224720586(-) m6A exon       24981863
chr2:224720593-224720594(-) m6A exon       24981863
chr2:224741781-224741782(-) m6A 3'UTR//intron       27773535
chr2:224741800-224741801(-) m6A 3'UTR//intron       27773535
chr2:224741806-224741807(-) m6A 3'UTR//intron       27773535
chr2:224741891-224741892(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:224741917-224741918(-) m6A 3'UTR//intron       27773535//22608085
chr2:224741950-224741951(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:224741958-224741959(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:224741984-224741985(-) m6A 3'UTR//intron       24981863//22608085
chr2:224742022-224742023(-) m6A 3'UTR//intron       22608085
chr2:224743025-224743026(-) m6A 3'UTR//intron       27773535
chr2:224743052-224743053(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:224743073-224743074(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:224743085-224743086(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:224743135-224743136(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:224743147-224743148(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:224743167-224743168(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:224743207-224743208(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:224743221-224743222(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:224743277-224743278(-) m6A 3'UTR//exon       24284625//24981863//27371828//22608085
chr2:224743294-224743295(-) m6A 3'UTR//exon       24284625//24981863//27371828
chr2:224743355-224743356(-) m6A 3'UTR//exon       24284625//24981863//27371828
chr2:224743439-224743440(-) m6A CDS       24284625//27773535//27371828
chr2:224744857-224744858(-) m6A CDS       24284625//27773535//27371828
chr2:224744876-224744877(-) m6A CDS       27773535//27371828
chr2:224744889-224744890(-) m6A CDS       27773535//27371828
chr2:224744915-224744916(-) m6A CDS       27773535//27371828
chr2:224744944-224744945(-) m6A CDS       27773535//27371828
chr2:224760265-224760266(-) m6A CDS//exon       27773535
chr2:224760322-224760323(-) m6A CDS//exon       27773535
chr2:224763681-224763682(-) m6A CDS//exon       27773535
chr2:224763712-224763713(-) m6A CDS//exon       27773535
chr2:224763717-224763718(-) m6A CDS//exon       27773535
chr2:224765680-224765681(-) m6A exon//intron       27773535
chr2:224765796-224765797(-) m6A exon//intron       27773535
chr2:224782700-224782701(-) m6A CDS//exon       27371828//27773536
chr2:224809867-224809868(-) m6A CDS//exon       27371828//27773536
chr2:224810002-224810003(-) m6A 5'UTR//exon       24981863//27371828//27773536
chr2:224810078-224810079(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3607-3p
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Microvesicle Fibroblasts|Mesenchymal stem cells     -
WDFY1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-3607-3p
Gemcitabine 60750 Drug interaction    RC00008306
5-Fluorouracil 3385 Drug interaction    RC00008305
cis-Diaminedichloroplatinum 2767 Drug interaction    RC00008304
N-(3-(5-Chloro-1H-pyrrolo[2,3-b]pyridine-3-carbonyl)-2,4-difluorophenyl)propane-1-sulfonamide 24180719 Drug interaction    RC00008307
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-3607-3p
N-(3-(5-Chloro-1H-pyrrolo[2,3-b]pyridine-3-carbonyl)-2,4-difluorophenyl)propane-1-sulfonamide 24180719       26456124

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3607-3p
Interactor2: WDFY1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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