Detail Information

Basic Information:


  VIRBase ID:  

HHID00072750

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3190-5p:           MIDN:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3190-5p MIDN
miRBase
Accession/Entrez ID		 MIMAT0015073 90007
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - Stx

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3190-5p
rs1286842109 chr19:47226964    C/T
rs1434365654 chr19:47226966    A/G
rs1447924123 chr19:47226974    A/G
rs1203971618 chr19:47226967    C/T
rs1420362286 chr19:47226958    G/A
rs868594954 chr19:47226957    T/C
rs893132130 chr19:47226961    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MIDN
chr19:1256335(+) A-I      intronic
chr19:1256649(+) A-I      intronic
chr19:1256686(+) A-I      intronic
chr19:1256695(+) A-I      intronic
chr19:1256642(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MIDN
chr19:1248583-1248584(+) m6A 5'UTR       24209618//25456834//24981863
chr19:1248645-1248646(+) m6A 5'UTR       24209618//25456834//24981863
chr19:1250001-1250002(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828
chr19:1250152-1250153(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr19:1250202-1250203(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr19:1250524-1250525(+) m6A CDS       -
chr19:1254322-1254323(+) m6A CDS       24284625
chr19:1254907-1254908(+) m6A CDS       24284625//24981863
chr19:1254995-1254996(+) m6A CDS       24284625
chr19:1255050-1255051(+) m6A CDS       24284625
chr19:1255444-1255445(+) m6A CDS       24284625
chr19:1255608-1255609(+) m6A CDS       24284625
chr19:1256996-1256997(+) m6A CDS       24284625//22575960
chr19:1257010-1257011(+) m6A CDS       24284625//22575960
chr19:1257017-1257018(+) m6A CDS       24284625
chr19:1257212-1257213(+) m6A CDS       24284625//24209618//24981863//22575960
chr19:1257324-1257325(+) m6A 3'UTR       24284625//24209618//24981863//22575960
chr19:1257461-1257462(+) m6A 3'UTR       24284625//24209618//25456834//24981863
chr19:1257763-1257764(+) m6A 3'UTR       26404942
chr19:1257786-1257787(+) m6A 3'UTR       26404942
chr19:1258032-1258033(+) m6A 3'UTR       24284625
chr19:1258074-1258075(+) m6A 3'UTR       24284625//24981863
chr19:1258143-1258144(+) m6A 3'UTR       24284625//24981863//26404942
chr19:1258181-1258182(+) m6A 3'UTR       25456834//24981863//26404942//27773535
chr19:1258274-1258275(+) m6A 3'UTR       24284625//25456834
chr19:1258854-1258855(+) m6A 3'UTR       27773535
chr19:1259068-1259069(+) m6A 3'UTR       27773535
chr19:1259093-1259094(+) m6A 3'UTR       27773535
chr19:1259125-1259126(+) m6A 3'UTR       27773535
chr19:1259137-1259138(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3190-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
MIDN
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-3190-5p
5-Fluorouracil 3385       28765596

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3190-5p
Interactor2: MIDN

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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