Detail Information

Basic Information:


  VIRBase ID:  

HHID00072731

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3190-5p:           BICD2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3190-5p BICD2
miRBase
Accession/Entrez ID
MIMAT0015073 23299
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - bA526D8.1//SMALED2//SMALED2A//SMALED2B

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3190-5p
rs1286842109 chr19:47226964    C/T
rs1434365654 chr19:47226966    A/G
rs1447924123 chr19:47226974    A/G
rs1203971618 chr19:47226967    C/T
rs1420362286 chr19:47226958    G/A
rs868594954 chr19:47226957    T/C
rs893132130 chr19:47226961    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BICD2
chr9:95505527(-) A-I      intronic
chr9:95505529(-) A-I      intronic
chr9:95505763(-) A-I      intronic
chr9:95515989(-) A-I      intronic
chr9:95515990(-) A-I      intronic
chr9:95515991(-) A-I      intronic
chr9:95516315(-) A-I      intronic
chr9:95518692(-) A-I      intronic
chr9:95519001(-) A-I      intronic
chr9:95504902(-) A-I      intronic
chr9:95515917(-) A-I      intronic
chr9:95514266(-) A-I      intronic
chr9:95519950(-) A-I      intronic
chr9:95519496(-) A-I      intronic
chr9:95504676(-) A-I      intronic
chr9:95519501(-) A-I      intronic
chr9:95519135(-) A-I      intronic
chr9:95520798(-) A-I      intronic
chr9:95516192(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BICD2
chr9:95473653-95473654(-) m6A 3'UTR       24981863//27773535//22608085
chr9:95473675-95473676(-) m6A 3'UTR       24981863//27773535//22608085
chr9:95473709-95473710(-) m6A 3'UTR       24981863//27773535//22608085
chr9:95473749-95473750(-) m6A 3'UTR       24981863//27773535//22608085
chr9:95473755-95473756(-) m6A 3'UTR       24981863//27773535//22608085
chr9:95474445-95474446(-) m6A 3'UTR       24284625
chr9:95474455-95474456(-) m6A 3'UTR       24284625
chr9:95474464-95474465(-) m6A 3'UTR       24284625
chr9:95474484-95474485(-) m6A 3'UTR       24284625
chr9:95474491-95474492(-) m6A 3'UTR       24284625
chr9:95475624-95475625(-) m6A 3'UTR       24284625//24981863
chr9:95475720-95475721(-) m6A 3'UTR       24284625//24981863
chr9:95475795-95475796(-) m6A 3'UTR//intron       24284625
chr9:95477282-95477283(-) m6A 3'UTR//intron       24284625//25456834//24981863//27371828
chr9:95477554-95477555(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr9:95477587-95477588(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr9:95477598-95477599(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr9:95477667-95477668(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr9:95480163-95480164(-) m6A CDS       24284625
chr9:95480923-95480924(-) m6A CDS       24284625//27773536
chr9:95480929-95480930(-) m6A CDS       24284625//27773536
chr9:95480989-95480990(-) m6A CDS       24284625//27371828//27773536
chr9:95481049-95481050(-) m6A CDS       24284625//24981863//27371828//27773536
chr9:95481115-95481116(-) m6A CDS       24284625//27371828//27773536//22575960
chr9:95481262-95481263(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//27773536//22575960
chr9:95481284-95481285(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//27773536//22575960
chr9:95481380-95481381(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:95481442-95481443(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr9:95481643-95481644(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr9:95481658-95481659(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr9:95481682-95481683(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr9:95481694-95481695(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr9:95481704-95481705(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr9:95481780-95481781(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:95481823-95481824(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr9:95482694-95482695(-) m6A CDS       24284625//24981863//27371828//27773536
chr9:95482702-95482703(-) m6A CDS       24284625//24981863//27371828//27773536
chr9:95482879-95482880(-) m6A CDS       24284625//24981863//27773535//27371828//27773536
chr9:95482887-95482888(-) m6A CDS       24284625//24981863//27773535//27371828//27773536
chr9:95482907-95482908(-) m6A CDS       24284625//24981863//27773535//27371828//27773536//22575960
chr9:95482988-95482989(-) m6A CDS       24284625//24981863//27773535//27371828//27773536//22575960
chr9:95484941-95484942(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr9:95484946-95484947(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr9:95484980-95484981(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr9:95484994-95484995(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr9:95485004-95485005(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr9:95491495-95491496(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22575960
chr9:95491509-95491510(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22575960
chr9:95526826-95526827(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22575960
chr9:95526920-95526921(-) m6A CDS       24284625//24209618//27371828//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3190-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
BICD2
Centrosome Cells (HeLa-Kyoto|HeLa)     33649340
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-3190-5p
5-Fluorouracil 3385       28765596

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3190-5p
Interactor2: BICD2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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