Detail Information

Basic Information:


  VIRBase ID:  

HHID00072716

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3190-5p:           CNTNAP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3190-5p CNTNAP1
miRBase
Accession/Entrez ID		 MIMAT0015073 8506
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CASPR//CHN3//CNTNAP//NRXN4//P190

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3190-5p
rs1286842109 chr19:47226964    C/T
rs1434365654 chr19:47226966    A/G
rs1447924123 chr19:47226974    A/G
rs1203971618 chr19:47226967    C/T
rs1420362286 chr19:47226958    G/A
rs868594954 chr19:47226957    T/C
rs893132130 chr19:47226961    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CNTNAP1
chr17:40837701(+) A-I      intronic
chr17:40848937(+) A-I      intronic
chr17:40848930(+) A-I      intronic
chr17:40848503(+) A-I      intronic
chr17:40848422(+) A-I      intronic
chr17:40848442(+) A-I      intronic
chr17:40848411(+) A-I      intronic
chr17:40848421(+) A-I      intronic
chr17:40848717(+) A-I      intronic
chr17:40848784(+) A-I      intronic
chr17:40848800(+) A-I      intronic
chr17:40848982(+) A-I      intronic
chr17:40848367(+) A-I      intronic
chr17:40846412(+) A-I      intronic
chr17:40845861(+) A-I      intronic
chr17:40848765(+) A-I      intronic
chr17:40846347(+) A-I      intronic
chr17:40846563(+) A-I      intronic
chr17:40848713(+) A-I      intronic
chr17:40848550(+) A-I      intronic
chr17:40848617(+) A-I      intronic
chr17:40846294(+) A-I      intronic
chr17:40845825(+) A-I      intronic
chr17:40845854(+) A-I      intronic
chr17:40845963(+) A-I      intronic
chr17:40848914(+) A-I      intronic
chr17:40845839(+) A-I      intronic
chr17:40842426(+) A-I      intronic
chr17:40848588(+) A-I      intronic
chr17:40845856(+) A-I      intronic
chr17:40845902(+) A-I      intronic
chr17:40845996(+) A-I      intronic
chr17:40845807(+) A-I      intronic
chr17:40846503(+) A-I      intronic
chr17:40846387(+) A-I      intronic
chr17:40846654(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CNTNAP1
chr17:40846532(+) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CNTNAP1
chr17:40834642-40834643(+) m6A 5'UTR       24209618//25456834//24981863
chr17:40834649-40834650(+) m6A 5'UTR       24209618//25456834//24981863
chr17:40834684-40834685(+) m6A 5'UTR       24209618//25456834//24981863
chr17:40834755-40834756(+) m6A 5'UTR       24209618//25456834//24981863
chr17:40834788-40834789(+) m6A 5'UTR       24209618//24981863
chr17:40834833-40834834(+) m6A 5'UTR       24209618//24981863
chr17:40839870-40839871(+) m6A CDS//exon       27371828
chr17:40851093-40851094(+) m6A 3'UTR       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3190-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
CNTNAP1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-3190-5p
5-Fluorouracil 3385       28765596

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3190-5p
Interactor2: CNTNAP1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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