Detail Information

Basic Information:


  VIRBase ID:  

HHID00072669

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3179:           SCIMP:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3179 SCIMP
miRBase
Accession/Entrez ID		 MIMAT0015056 388325
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C17orf87//UNQ5783

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3179
rs1229893475 chr16:14901579    G/A
rs1340262765 chr16:14901578    C/T
rs1351100204 chr16:14901559    A/G
rs1555527332 chr16:16300220    A/T
rs1398613616 chr16:14901562    A/G
rs1555527331 chr16:16300216    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SCIMP
chr17:5126983(-) A-I      intronic
chr17:5126942(-) A-I      intronic
chr17:5126947(-) A-I      intronic
chr17:5128863(-) A-I      intronic
chr17:5126953(-) A-I      intronic
chr17:5127009(-) A-I      intronic
chr17:5128811(-) A-I      intronic
chr17:5132853(-) A-I      intronic
chr17:5134533(-) A-I      intronic
chr17:5126941(-) A-I      intronic
chr17:5130623(-) A-I      intronic
chr17:5136765(-) A-I      intronic
chr17:5114817(-) A-I      intronic
chr17:5114813(-) A-I      intronic
chr17:5114691(-) A-I      intronic
chr17:5114652(-) A-I      intronic
chr17:5114625(-) A-I      intronic
chr17:5119267(-) A-I      intronic
chr17:5119330(-) A-I      intronic
chr17:5121393(-) A-I      intronic
chr17:5121442(-) A-I      intronic
chr17:5121449(-) A-I      intronic
chr17:5121799(-) A-I      intronic
chr17:5122779(-) A-I      intronic
chr17:5122788(-) A-I      intronic
chr17:5122840(-) A-I      intronic
chr17:5134140(-) A-I      intronic
chr17:5134173(-) A-I      intronic
chr17:5134183(-) A-I      intronic
chr17:5135105(-) A-I      intronic
chr17:5135106(-) A-I      intronic
chr17:5135229(-) A-I      intronic
chr17:5135239(-) A-I      intronic
chr17:5135294(-) A-I      intronic
chr17:5135304(-) A-I      intronic
chr17:5135305(-) A-I      intronic
chr17:5135313(-) A-I      intronic
chr17:5122766(-) A-I      intronic
chr17:5136887(-) A-I      intronic
chr17:5136900(-) A-I      intronic
chr17:5122760(-) A-I      intronic
chr17:5136735(-) A-I      intronic
chr17:5136838(-) A-I      intronic
chr17:5136824(-) A-I      intronic
chr17:5136796(-) A-I      intronic
chr17:5136788(-) A-I      intronic
chr17:5129018(-) A-I      intronic
chr17:5133959(-) A-I      intronic
chr17:5122209(-) A-I      intronic
chr17:5131926(-) A-I      intronic
chr17:5131619(-) A-I      intronic
chr17:5133395(-) A-I      intronic
chr17:5130653(-) A-I      intronic
chr17:5133971(-) A-I      intronic
chr17:5114695(-) A-I      intronic
chr17:5130729(-) A-I      intronic
chr17:5134050(-) A-I      intronic
chr17:5136210(-) A-I      intronic
chr17:5136108(-) A-I      intronic
chr17:5114769(-) A-I      intronic
chr17:5135115(-) A-I      intronic
chr17:5133998(-) A-I      intronic
chr17:5127950(-) A-I      intronic
chr17:5133956(-) A-I      intronic
chr17:5134398(-) A-I      intronic
chr17:5119282(-) A-I      intronic
chr17:5130485(-) A-I      intronic
chr17:5114599(-) A-I      intronic
chr17:5115199(-) A-I      intronic
chr17:5128925(-) A-I      intronic
chr17:5128945(-) A-I      intronic
chr17:5136699(-) A-I      intronic
chr17:5121877(-) A-I      intronic
chr17:5122662(-) A-I      intronic
chr17:5114737(-) A-I      intronic
chr17:5121913(-) A-I      intronic
chr17:5119488(-) A-I      intronic
chr17:5129013(-) A-I      intronic
chr17:5130775(-) A-I      intronic
chr17:5134642(-) A-I      intronic
chr17:5114805(-) A-I      intronic
chr17:5121881(-) A-I      intronic
chr17:5133394(-) A-I      intronic
chr17:5130518(-) A-I      intronic
chr17:5122847(-) A-I      intronic
chr17:5135160(-) A-I      intronic
chr17:5136783(-) A-I      intronic
chr17:5131841(-) A-I      intronic
chr17:5122168(-) A-I      intronic
chr17:5130564(-) A-I      intronic
chr17:5121929(-) A-I      intronic
chr17:5134152(-) A-I      intronic
chr17:5127880(-) A-I      intronic
chr17:5131350(-) A-I      intronic
chr17:5129049(-) A-I      intronic
chr17:5134425(-) A-I      intronic
chr17:5121711(-) A-I      intronic
chr17:5134135(-) A-I      intronic
chr17:5125232(-) A-I      intronic
chr17:5136730(-) A-I      intronic
chr17:5127912(-) A-I      intronic
chr17:5133972(-) A-I      intronic
chr17:5136094(-) A-I      intronic
chr17:5128844(-) A-I      intronic
chr17:5134507(-) A-I      intronic
chr17:5132805(-) A-I      intronic
chr17:5122538(-) A-I      intronic
chr17:5128975(-) A-I      intronic
chr17:5114719(-) A-I      intronic
chr17:5122757(-) A-I      intronic
chr17:5136736(-) A-I      intronic
chr17:5136808(-) A-I      intronic
chr17:5135349(-) A-I      intronic
chr17:5122717(-) A-I      intronic
chr17:5134410(-) A-I      intronic
chr17:5128974(-) A-I      intronic
chr17:5134230(-) A-I      intronic
chr17:5127896(-) A-I      intronic
chr17:5136036(-) A-I      intronic
chr17:5134217(-) A-I      intronic
chr17:5121727(-) A-I      intronic
chr17:5130543(-) A-I      intronic
chr17:5128022(-) A-I      intronic
chr17:5130776(-) A-I      intronic
chr17:5128025(-) A-I      intronic
chr17:5114624(-) A-I      intronic
chr17:5134222(-) A-I      intronic
chr17:5119461(-) A-I      intronic
chr17:5122884(-) A-I      intronic
chr17:5132868(-) A-I      intronic
chr17:5127979(-) A-I      intronic
chr17:5114697(-) A-I      intronic
chr17:5132963(-) A-I      intronic
chr17:5136142(-) A-I      intronic
chr17:5128935(-) A-I      intronic
chr17:5136894(-) A-I      intronic
chr17:5132922(-) A-I      intronic
chr17:5136806(-) A-I      intronic
chr17:5133999(-) A-I      intronic
chr17:5121520(-) A-I      intronic
chr17:5134159(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SCIMP
chr17:5116670(-) A-I intron -    22327324
chr17:5116682(-) A-I intron -    22327324
chr17:5116686(-) A-I intron -    22327324
chr17:5116705(-) A-I intron -    22327324
chr17:5116898(-) A-I intron -    22327324
chr17:5117031(-) A-I intron -    22327324
chr17:5117946(-) A-I intron -    22327324
chr17:5133395(-) A-I intron -    22327324
chr17:5133959(-) A-I intron -    22327324
chr17:5134205(-) A-I intron -    22327324
chr17:5116805(-) A-G intron -    21725310
chr17:5117148(-) A-G intron -    21725310
chr17:5117662(-) A-G intron -    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SCIMP
chr17:5112258-5112259(-) m6A 3'UTR       28052920
chr17:5112290-5112291(-) m6A 3'UTR       28052920
chr17:5112323-5112324(-) m6A 3'UTR       28052920
chr17:5112342-5112343(-) m6A 3'UTR       28052920
chr17:5112371-5112372(-) m6A 3'UTR       28052920
chr17:5112418-5112419(-) m6A 3'UTR       28052920
chr17:5112455-5112456(-) m6A 3'UTR       28052920
chr17:5112726-5112727(-) m6A 3'UTR       28052920
chr17:5112759-5112760(-) m6A 3'UTR       28052920
chr17:5112863-5112864(-) m6A 3'UTR       28052920
chr17:5112889-5112890(-) m6A 3'UTR       28052920
chr17:5112959-5112960(-) m6A 3'UTR       28052920
chr17:5112999-5113000(-) m6A 3'UTR       28052920
chr17:5113052-5113053(-) m6A 3'UTR       -
chr17:5113074-5113075(-) m6A 3'UTR       -
chr17:5113386-5113387(-) m6A 3'UTR       28052920
chr17:5113792-5113793(-) m6A 3'UTR       28052920
chr17:5113825-5113826(-) m6A 3'UTR       28052920
chr17:5113841-5113842(-) m6A 3'UTR       28052920
chr17:5113874-5113875(-) m6A 3'UTR       28052920
chr17:5113898-5113899(-) m6A 3'UTR       28052920
chr17:5113933-5113934(-) m6A 3'UTR       28052920
chr17:5113946-5113947(-) m6A 3'UTR       28052920
chr17:5114019-5114020(-) m6A 3'UTR       28052920
chr17:5114037-5114038(-) m6A 3'UTR       28052920
chr17:5114068-5114069(-) m6A 3'UTR       28052920
chr17:5114093-5114094(-) m6A 3'UTR       28052920
chr17:5114181-5114182(-) m6A CDS       28052920

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3179
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
SCIMP
Chromatin K562 cells     -
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3179
Interactor2: SCIMP

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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