Detail Information

Basic Information:


  VIRBase ID:  

HHID00072637

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3179:           TNRC6A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3179 TNRC6A
miRBase
Accession/Entrez ID
MIMAT0015056 27327
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CAGH26//FAME6//GW1//GW182//TNRC6

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3179
rs1229893475 chr16:14901579    G/A
rs1340262765 chr16:14901578    C/T
rs1351100204 chr16:14901559    A/G
rs1555527332 chr16:16300220    A/T
rs1398613616 chr16:14901562    A/G
rs1555527331 chr16:16300216    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TNRC6A
chr16:24745375(+) A-I      intronic
chr16:24814744(+) A-I      intronic
chr16:24746402(+) A-I      intronic
chr16:24814741(+) A-I      intronic
chr16:24808118(+) A-I      intronic
chr16:24750900(+) A-I      intronic
chr16:24746341(+) A-I      intronic
chr16:24814697(+) A-I      intronic
chr16:24814695(+) A-I      intronic
chr16:24812946(+) A-I      intronic
chr16:24747339(+) A-I      intronic
chr16:24747330(+) A-I      intronic
chr16:24747325(+) A-I      intronic
chr16:24747324(+) A-I      intronic
chr16:24747315(+) A-I      intronic
chr16:24747296(+) A-I      intronic
chr16:24812902(+) A-I      intronic
chr16:24779699(+) A-I      intronic
chr16:24779595(+) A-I      intronic
chr16:24779591(+) A-I      intronic
chr16:24779589(+) A-I      intronic
chr16:24761372(+) A-I      intronic
chr16:24761350(+) A-I      intronic
chr16:24761183(+) A-I      intronic
chr16:24760335(+) A-I      intronic
chr16:24760282(+) A-I      intronic
chr16:24757037(+) A-I      intronic
chr16:24754922(+) A-I      intronic
chr16:24754835(+) A-I      intronic
chr16:24754719(+) A-I      intronic
chr16:24754180(+) A-I      intronic
chr16:24754172(+) A-I      intronic
chr16:24753987(+) A-I      intronic
chr16:24753379(+) A-I      intronic
chr16:24746560(+) A-I      intronic
chr16:24746579(+) A-I      intronic
chr16:24746589(+) A-I      intronic
chr16:24747375(+) A-I      intronic
chr16:24747431(+) A-I      intronic
chr16:24750196(+) A-I      intronic
chr16:24750198(+) A-I      intronic
chr16:24750239(+) A-I      intronic
chr16:24815204(+) A-I      intronic
chr16:24750275(+) A-I      intronic
chr16:24750341(+) A-I      intronic
chr16:24750893(+) A-I      intronic
chr16:24750929(+) A-I      intronic
chr16:24814564(+) A-I      intronic
chr16:24750945(+) A-I      intronic
chr16:24750980(+) A-I      intronic
chr16:24813707(+) A-I      intronic
chr16:24813056(+) A-I      intronic
chr16:24813000(+) A-I      intronic
chr16:24794158(+) A-I      intronic
chr16:24813708(+) A-I      intronic
chr16:24751014(+) A-I      intronic
chr16:24814506(+) A-I      intronic
chr16:24814585(+) A-I      intronic
chr16:24753346(+) A-I      intronic
chr16:24814690(+) A-I      intronic
chr16:24815057(+) A-I      intronic
chr16:24815102(+) A-I      intronic
chr16:24815172(+) A-I      intronic
chr16:24753366(+) A-I      intronic
chr16:24754097(+) A-I      intronic
chr16:24827737(+) A-I      intronic
chr16:24794153(+) A-I      intronic
chr16:24794060(+) A-I      intronic
chr16:24794021(+) A-I      intronic
chr16:24794020(+) A-I      intronic
chr16:24794019(+) A-I      intronic
chr16:24794013(+) A-I      intronic
chr16:24794010(+) A-I      intronic
chr16:24793273(+) A-I      intronic
chr16:24793261(+) A-I      intronic
chr16:24793223(+) A-I      intronic
chr16:24793199(+) A-I      intronic
chr16:24779703(+) A-I      intronic
chr16:24746397(+) A-I      intronic
chr16:24750255(+) A-I      intronic
chr16:24754666(+) A-I      intronic
chr16:24793417(+) A-I      intronic
chr16:24761382(+) A-I      intronic
chr16:24745263(+) A-I      intronic
chr16:24754674(+) A-I      intronic
chr16:24754786(+) A-I      intronic
chr16:24753418(+) A-I      intronic
chr16:24753297(+) A-I      intronic
chr16:24754747(+) A-I      intronic
chr16:24746545(+) A-I      intronic
chr16:24754001(+) A-I      intronic
chr16:24760216(+) A-I      intronic
chr16:24775844(+) A-I      intronic
chr16:24746482(+) A-I      intronic
chr16:24754158(+) A-I      intronic
chr16:24750917(+) A-I      intronic
chr16:24812994(+) A-I      intronic
chr16:24815091(+) A-I      intronic
chr16:24827817(+) A-I      intronic
chr16:24745416(+) A-I      intronic
chr16:24758219(+) A-I      intronic
chr16:24750249(+) A-I      intronic
chr16:24814959(+) A-I      intronic
chr16:24750981(+) A-I      intronic
chr16:24814974(+) A-I      intronic
chr16:24760265(+) A-I      intronic
chr16:24813070(+) A-I      intronic
chr16:24754665(+) A-I      intronic
chr16:24746483(+) A-I      intronic
chr16:24746383(+) A-I      intronic
chr16:24775824(+) A-I      intronic
chr16:24754173(+) A-I      intronic
chr16:24750244(+) A-I      intronic
chr16:24827752(+) A-I      intronic
chr16:24795462(+) A-I      intronic
chr16:24784054(+) A-I      intronic
chr16:24814966(+) A-I      intronic
chr16:24813709(+) A-I      intronic
chr16:24779639(+) A-I      intronic
chr16:24754910(+) A-I      intronic
chr16:24754057(+) A-I      intronic
chr16:24753262(+) A-I      intronic
chr16:24754788(+) A-I      intronic
chr16:24754042(+) A-I      intronic
chr16:24744391(+) A-I      intronic
chr16:24753257(+) A-I      intronic
chr16:24745430(+) A-I      intronic
chr16:24778187(+) A-I      intronic
chr16:24793325(+) A-I      intronic
chr16:24813073(+) A-I      intronic
chr16:24813021(+) A-I      intronic
chr16:24813623(+) A-I      intronic
chr16:24750262(+) A-I      intronic
chr16:24793224(+) A-I      intronic
chr16:24827747(+) A-I      intronic
chr16:24753213(+) A-I      intronic
chr16:24775917(+) A-I      intronic
chr16:24746401(+) A-I      intronic
chr16:24750989(+) A-I      intronic
chr16:24794514(+) A-I      intronic
chr16:24746441(+) A-I      intronic
chr16:24813598(+) A-I      intronic
chr16:24750983(+) A-I      intronic
chr16:24761205(+) A-I      intronic
chr16:24757627(+) A-I      intronic
chr16:24758213(+) A-I      intronic
chr16:24815147(+) A-I      intronic
chr16:24814490(+) A-I      intronic
chr16:24745346(+) A-I      intronic
chr16:24754123(+) A-I      intronic
chr16:24793943(+) A-I      intronic
chr16:24760276(+) A-I      intronic
chr16:24795520(+) A-I      intronic
chr16:24794082(+) A-I      intronic
chr16:24753979(+) A-I      intronic
chr16:24753422(+) A-I      intronic
chr16:24757056(+) A-I      intronic
chr16:24750869(+) A-I      intronic
chr16:24793342(+) A-I      intronic
chr16:24779497(+) A-I      intronic
chr16:24813628(+) A-I      intronic
chr16:24812874(+) A-I      intronic
chr16:24779498(+) A-I      intronic
chr16:24813020(+) A-I      intronic
chr16:24812926(+) A-I      intronic
chr16:24793405(+) A-I      intronic
chr16:24794011(+) A-I      intronic
chr16:24793205(+) A-I      intronic
chr16:24812976(+) A-I      intronic
chr16:24753211(+) A-I      intronic
chr16:24814485(+) A-I      intronic
chr16:24813820(+) A-I      intronic
chr16:24794181(+) A-I      intronic
chr16:24745421(+) A-I      intronic
chr16:24753971(+) A-I      intronic
chr16:24761341(+) A-I      intronic
chr16:24754113(+) A-I      intronic
chr16:24745441(+) A-I      intronic
chr16:24794592(+) A-I      intronic
chr16:24812985(+) A-I      intronic
chr16:24753988(+) A-I      intronic
chr16:24815044(+) A-I      intronic
chr16:24758215(+) A-I      intronic
chr16:24814575(+) A-I      intronic
chr16:24775905(+) A-I      intronic
chr16:24812991(+) A-I      intronic
chr16:24779704(+) A-I      intronic
chr16:24812911(+) A-I      intronic
chr16:24793350(+) A-I      intronic
chr16:24814486(+) A-I      intronic
chr16:24815220(+) A-I      intronic
chr16:24747437(+) A-I      intronic
chr16:24815085(+) A-I      intronic
chr16:24812927(+) A-I      intronic
chr16:24793283(+) A-I      intronic
chr16:24775818(+) A-I      intronic
chr16:24753275(+) A-I      intronic
chr16:24761330(+) A-I      intronic
chr16:24754714(+) A-I      intronic
chr16:24753377(+) A-I      intronic
chr16:24813712(+) A-I      intronic
chr16:24793404(+) A-I      intronic
chr16:24775787(+) A-I      intronic
chr16:24814493(+) A-I      intronic
chr16:24793944(+) A-I      intronic
chr16:24754655(+) A-I      intronic
chr16:24814581(+) A-I      intronic
chr16:24814965(+) A-I      intronic
chr16:24761381(+) A-I      intronic
chr16:24775748(+) A-I      intronic
chr16:24815167(+) A-I      intronic
chr16:24751068(+) A-I      intronic
chr16:24775717(+) A-I      intronic
chr16:24745446(+) A-I      intronic
chr16:24745341(+) A-I      intronic
chr16:24779660(+) A-I      intronic
chr16:24753303(+) A-I      intronic
chr16:24750254(+) A-I      intronic
chr16:24747366(+) A-I      intronic
chr16:24754094(+) A-I      intronic
chr16:24760325(+) A-I      intronic
chr16:24783933(+) A-I      intronic
chr16:24779633(+) A-I      intronic
chr16:24775777(+) A-I      intronic
chr16:24812940(+) A-I      intronic
chr16:24753209(+) A-I      intronic
chr16:24745349(+) A-I      intronic
chr16:24761199(+) A-I      intronic
chr16:24813819(+) A-I      intronic
chr16:24750939(+) A-I      intronic
chr16:24814689(+) A-I      intronic
chr16:24747419(+) A-I      intronic
chr16:24754746(+) A-I      intronic
chr16:24813811(+) A-I      intronic
chr16:24746407(+) A-I      intronic
chr16:24775895(+) A-I      intronic
chr16:24761373(+) A-I      intronic
chr16:24793208(+) A-I      intronic
chr16:24747355(+) A-I      intronic
chr16:24813057(+) A-I      intronic
chr16:24747214(+) A-I      intronic
chr16:24815045(+) A-I      intronic
chr16:24813704(+) A-I      intronic
chr16:24751036(+) A-I      intronic
chr16:24757600(+) A-I      intronic
chr16:24745328(+) A-I      intronic
chr16:24813058(+) A-I      intronic
chr16:24753392(+) A-I      intronic
chr16:24751074(+) A-I      intronic
chr16:24794724(+) A-I      intronic
chr16:24813710(+) A-I      intronic
chr16:24806863(+) A-I      intronic
chr16:24750276(+) A-I      intronic
chr16:24747438(+) A-I      intronic
chr16:24765244(+) A-I      intronic
chr16:24745268(+) A-I      intronic
chr16:24813711(+) A-I      intronic
chr16:24757062(+) A-I      intronic
chr16:24813833(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TNRC6A
chr16:24813598(+) A-I intron -    21960545   //22327324
chr16:24757062(+) A-I intron -    21960545
chr16:24757600(+) A-I intron -    21960545
chr16:24782967(+) A-I intron -    21960545
chr16:24754001(+) A-G intron -    22484847
chr16:24754910(+) A-G intron -    22484847
chr16:24813070(+) A-G intron -    22484847
chr16:24813598(+) A-G intron -    22484847
chr16:24813819(+) A-G intron -    22484847
chr16:24814965(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TNRC6A
chr16:24762063-24762064(+) m1A CDS//intron       26863196
chr16:24762067-24762068(+) m6A CDS//intron       24981863//27773535//22608085
chr16:24769667-24769668(+) m6A CDS//intron       24284625//24981863//27773535//22608085
chr16:24788260-24788261(+) m6A CDS//exon       24284625//24981863//27773535//22608085
chr16:24788521-24788522(+) m6A CDS       24284625//24981863
chr16:24788527-24788528(+) m6A CDS       24284625//24981863
chr16:24788571-24788572(+) m6A CDS       24284625//24981863
chr16:24788598-24788599(+) m6A CDS       24284625//24981863
chr16:24788661-24788662(+) m6A CDS       24284625//24981863//22608085
chr16:24788670-24788671(+) m6A CDS       24284625//24981863//22608085
chr16:24789685-24789686(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr16:24789781-24789782(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr16:24800558-24800559(+) m6A 3'UTR//CDS       24284625//24981863//22608085
chr16:24800601-24800602(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22608085
chr16:24800633-24800634(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:24800762-24800763(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:24800786-24800787(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:24800826-24800827(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:24800840-24800841(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:24800961-24800962(+) Cm 3'UTR//CDS       -
chr16:24801086-24801087(+) m6A 3'UTR//CDS       24284625//24981863//26404942//22575960//22608085
chr16:24801093-24801094(+) m6A 3'UTR//CDS       24284625//24981863//26404942//22575960//22608085
chr16:24801238-24801239(+) m6A 3'UTR//CDS       24284625//24981863//26404942//27773535//22608085
chr16:24801318-24801319(+) m6A 3'UTR//CDS       24284625//24981863//26404942//22608085
chr16:24801359-24801360(+) m6A 3'UTR//CDS       24284625//24981863//26404942//22608085
chr16:24801557-24801558(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//22608085
chr16:24801665-24801666(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//22575960//22608085
chr16:24801701-24801702(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//22608085
chr16:24801769-24801770(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//22608085
chr16:24801782-24801783(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//22608085
chr16:24801815-24801816(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//22608085
chr16:24801928-24801929(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22608085
chr16:24801958-24801959(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22608085
chr16:24802021-24802022(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:24802043-24802044(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:24802088-24802089(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:24802093-24802094(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:24802134-24802135(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:24802174-24802175(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:24802198-24802199(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:24802210-24802211(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:24802240-24802241(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:24802270-24802271(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:24802323-24802324(+) m6A 3'UTR//CDS       24284625//25456834//24981863//26404942//22575960//22608085
chr16:24802358-24802359(+) m6A 3'UTR//CDS       24284625//25456834//24981863//26404942//22575960//22608085
chr16:24802470-24802471(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:24802488-24802489(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:24802540-24802541(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:24802629-24802630(+) m6A 3'UTR//CDS       24284625//24981863//26404942//22608085
chr16:24802639-24802640(+) m6A 3'UTR//CDS       24284625//24981863//26404942//22608085
chr16:24802661-24802662(+) m6A 3'UTR//CDS       24284625//24981863//22608085
chr16:24802707-24802708(+) m6A 3'UTR//CDS       24284625//24981863//22608085
chr16:24802733-24802734(+) m6A 3'UTR//CDS       24284625//24981863//22608085
chr16:24802796-24802797(+) m6A 3'UTR//CDS       24284625//25456834//24981863//26404942//22575960//22608085
chr16:24802802-24802803(+) m6A 3'UTR//CDS       24284625//25456834//24981863//26404942//22575960//22608085
chr16:24802814-24802815(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:24802854-24802855(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr16:24802881-24802882(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr16:24802911-24802912(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22608085
chr16:24802929-24802930(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22608085
chr16:24802975-24802976(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22608085
chr16:24803021-24803022(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//22608085
chr16:24803030-24803031(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//22608085
chr16:24803063-24803064(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//22608085
chr16:24803114-24803115(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//22608085
chr16:24804686-24804687(+) m6A exon//intron       22608085
chr16:24807069-24807070(+) m6A exon//intron       24981863
chr16:24807640-24807641(+) m6A exon//intron       24981863
chr16:24807661-24807662(+) m6A exon//intron       24981863
chr16:24808829-24808830(+) m6A 3'UTR//CDS//exon       24981863
chr16:24808866-24808867(+) m6A 3'UTR//CDS//exon       24981863
chr16:24808877-24808878(+) m6A 3'UTR//CDS//exon       24981863
chr16:24809239-24809240(+) m6A 3'UTR//CDS//exon       24981863
chr16:24809275-24809276(+) m6A 3'UTR//CDS//exon       24981863
chr16:24820676-24820677(+) m6A 3'UTR//CDS//exon       26404942
chr16:24820682-24820683(+) m6A 3'UTR//CDS//exon       26404942
chr16:24820706-24820707(+) m6A 3'UTR//CDS//exon       26404942
chr16:24820731-24820732(+) m6A 3'UTR//CDS//exon       26404942
chr16:24828220-24828221(+) m6A 3'UTR//CDS//exon       24284625
chr16:24828265-24828266(+) m6A 3'UTR//CDS//exon       24284625
chr16:24828271-24828272(+) m6A 3'UTR//CDS//exon       24284625
chr16:24829931-24829932(+) m6A 3'UTR//CDS//exon       24284625
chr16:24831507-24831508(+) m6A 3'UTR//CDS//exon       24284625
chr16:24834921-24834922(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863
chr16:24834960-24834961(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863
chr16:24834973-24834974(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863
chr16:24834999-24835000(+) m6A 3'UTR//CDS//exon//intron       24284625//24981863
chr16:24835142-24835143(+) m6A 3'UTR//exon//intron       24284625//24981863
chr16:24835156-24835157(+) m6A 3'UTR//exon//intron       24284625//24981863
chr16:24836900-24836901(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr16:24836913-24836914(+) m6A 3'UTR//intron       24284625//24981863//22575960//22608085
chr16:24836947-24836948(+) m6A 3'UTR//intron       24284625//24981863//22575960//22608085
chr16:24836957-24836958(+) m6A 3'UTR//intron       24284625//24981863//22575960//22608085
chr16:24837014-24837015(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:24837072-24837073(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:24837082-24837083(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:24837120-24837121(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:24837162-24837163(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:24837222-24837223(+) m6A 3'UTR//intron       24284625//25456834//24981863//22575960//22608085
chr16:24837294-24837295(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr16:24837365-24837366(+) m6A 3'UTR//intron       24981863//22608085
chr16:24837385-24837386(+) m6A 3'UTR//intron       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3179
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
TNRC6A
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3179
Interactor2: TNRC6A

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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