Basic Information:

  VIRBase ID:  

HHID00072636

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3179:  MIMAT0015056          GGA1:  NM_001172687     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3179	GGA1
miRBase Accession/Entrez ID	MIMAT0015056	26088
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3179	rs1229893475 chr16:14901579    G/A rs1340262765 chr16:14901578    C/T rs1351100204 chr16:14901559    A/G rs1555527332 chr16:16300220    A/T rs1398613616 chr16:14901562    A/G rs1555527331 chr16:16300216    G/A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GGA1	chr22:38006455(+) A-I      ncRNA chr22:38006487(+) A-I      ncRNA chr22:38006450(+) A-I      ncRNA chr22:38006486(+) A-I      ncRNA chr22:38008400(+) A-I      intronic chr22:38006647(+) A-I      ncRNA chr22:38006414(+) A-I      ncRNA chr22:38006415(+) A-I      ncRNA chr22:38006431(+) A-I      ncRNA chr22:38024087(+) A-I      intronic chr22:38023975(+) A-I      intronic chr22:38009512(+) A-I      intronic chr22:38008399(+) A-I      intronic chr22:38008065(+) A-I      intronic chr22:38008255(+) A-I      intronic chr22:38008288(+) A-I      intronic chr22:38008332(+) A-I      intronic chr22:38008352(+) A-I      intronic chr22:38008358(+) A-I      intronic chr22:38008364(+) A-I      intronic chr22:38008368(+) A-I      intronic chr22:38008391(+) A-I      intronic chr22:38008411(+) A-I      intronic chr22:38008424(+) A-I      intronic chr22:38008429(+) A-I      intronic chr22:38008562(+) A-I      intronic chr22:38009557(+) A-I      intronic chr22:38008593(+) A-I      intronic chr22:38008599(+) A-I      intronic chr22:38008693(+) A-I      intronic chr22:38008698(+) A-I      intronic chr22:38008726(+) A-I      intronic chr22:38008616(+) A-I      intronic chr22:38008050(+) A-I      intronic chr22:38008619(+) A-I      intronic chr22:38008621(+) A-I      intronic chr22:38024350(+) A-I      intronic chr22:38009653(+) A-I      intronic chr22:38023008(+) A-I      intronic chr22:38023018(+) A-I      intronic chr22:38023150(+) A-I      intronic chr22:38024184(+) A-I      intronic chr22:38009451(+) A-I      intronic chr22:38009525(+) A-I      intronic chr22:38009533(+) A-I      intronic chr22:38023053(+) A-I      intronic chr22:38009537(+) A-I      intronic chr22:38009547(+) A-I      intronic chr22:38009549(+) A-I      intronic chr22:38009564(+) A-I      intronic chr22:38008634(+) A-I      intronic chr22:38009553(+) A-I      intronic chr22:38009582(+) A-I      intronic chr22:38024332(+) A-I      intronic chr22:38006504(+) A-I      intronic chr22:38006545(+) A-I      intronic chr22:38006582(+) A-I      intronic chr22:38024344(+) A-I      intronic chr22:38008601(+) A-I      intronic chr22:38008666(+) A-I      intronic chr22:38008670(+) A-I      intronic chr22:38008687(+) A-I      intronic chr22:38008741(+) A-I      intronic chr22:38006480(+) A-I      ncRNA chr22:38024052(+) A-I      intronic chr22:38008075(+) A-I      intronic chr22:38007994(+) A-I      intronic chr22:38022940(+) A-I      intronic chr22:38008268(+) A-I      intronic chr22:38008467(+) A-I      intronic chr22:38008618(+) A-I      intronic chr22:38008269(+) A-I      intronic chr22:38023986(+) A-I      intronic chr22:38023946(+) A-I      intronic chr22:38008142(+) A-I      intronic chr22:38008000(+) A-I      intronic chr22:38022973(+) A-I      intronic chr22:38008014(+) A-I      intronic chr22:38023113(+) A-I      intronic chr22:38020404(+) A-I      intronic chr22:38008722(+) A-I      intronic chr22:38008761(+) A-I      intronic chr22:38024097(+) A-I      intronic chr22:38024331(+) A-I      intronic chr22:38008147(+) A-I      intronic chr22:38015542(+) A-I      intronic chr22:38022970(+) A-I      intronic chr22:38022969(+) A-I      intronic chr22:38007909(+) A-I      intronic chr22:38007997(+) A-I      intronic chr22:38007998(+) A-I      intronic chr22:38008092(+) A-I      intronic chr22:38009613(+) A-I      intronic chr22:38014009(+) A-I      3'UTR chr22:38013981(+) A-I      3'UTR chr22:38013631(+) A-I      3'UTR chr22:38014109(+) A-I      3'UTR chr22:38013579(+) A-I      3'UTR chr22:38015587(+) A-I      intronic chr22:38015574(+) A-I      intronic chr22:38026686(+) A-I      intronic chr22:38015515(+) A-I      intronic chr22:38008022(+) A-I      intronic chr22:38023181(+) A-I      intronic chr22:38008660(+) A-I      intronic chr22:38024185(+) A-I      intronic chr22:38007982(+) A-I      intronic chr22:38024098(+) A-I      intronic chr22:38024115(+) A-I      intronic chr22:38008066(+) A-I      intronic chr22:38008782(+) A-I      intronic chr22:38023973(+) A-I      intronic chr22:38011987(+) A-I      intronic chr22:38008104(+) A-I      intronic chr22:38023074(+) A-I      intronic chr22:38009447(+) A-I      intronic chr22:38007881(+) A-I      intronic chr22:38006522(+) A-I      intronic chr22:38010911(+) A-I      intronic chr22:38023009(+) A-I      intronic chr22:38022983(+) A-I      intronic chr22:38008210(+) A-I      intronic chr22:38008488(+) A-I      intronic chr22:38009686(+) A-I      intronic chr22:38006548(+) A-I      intronic chr22:38008434(+) A-I      intronic chr22:38008056(+) A-I      intronic chr22:38007903(+) A-I      intronic chr22:38024150(+) A-I      intronic chr22:38024044(+) A-I      intronic chr22:38007983(+) A-I      intronic chr22:38006557(+) A-I      intronic chr22:38023963(+) A-I      intronic chr22:38022936(+) A-I      intronic chr22:38023010(+) A-I      intronic chr22:38023102(+) A-I      intronic chr22:38024322(+) A-I      intronic chr22:38008216(+) A-I      intronic chr22:38008113(+) A-I      intronic chr22:38024014(+) A-I      intronic chr22:38011515(+) A-I      intronic chr22:38007963(+) A-I      intronic chr22:38023078(+) A-I      intronic chr22:38024031(+) A-I      intronic chr22:38008046(+) A-I      intronic chr22:38011720(+) A-I      intronic chr22:38006528(+) A-I      intronic chr22:38008200(+) A-I      intronic chr22:38008084(+) A-I      intronic chr22:38010714(+) A-I      intronic chr22:38008284(+) A-I      intronic chr22:38024003(+) A-I      intronic chr22:38009470(+) A-I      intronic chr22:38024309(+) A-I      intronic chr22:38006676(+) A-I      ncRNA chr22:38006468(+) A-I      ncRNA chr22:38006609(+) A-I      ncRNA chr22:38006610(+) A-I      ncRNA chr22:38006622(+) A-I      ncRNA chr22:38006369(+) A-I      ncRNA chr22:38006490(+) A-I      ncRNA chr22:38006661(+) A-I      ncRNA chr22:38006420(+) A-I      ncRNA

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GGA1	chr22:38007887(+) A-I intron -    15258596   //21960545   //22327324 chr22:38007909(+) A-I intron -    15258596 chr22:38007949(+) A-I intron -    15258596 chr22:38007973(+) A-I intron -    15258596 chr22:38007975(+) A-I intron -    15258596 chr22:38007983(+) A-I intron -    15258596 chr22:38008000(+) A-I intron -    15258596 chr22:38019975(+) A-I intron -    15342557 chr22:38020180(+) A-I intron -    15342557   //19478186 chr22:38020844(+) A-I intron -    15342557 chr22:38022046(+) A-I intron -    15342557 chr22:38022935(+) A-I intron -    15342557   //15258596 chr22:38022936(+) A-I intron -    15342557   //15258596 chr22:38022968(+) A-I intron -    15342557   //15258596 chr22:38022969(+) A-I intron -    15342557   //15258596 chr22:38023010(+) A-I intron -    15342557 chr22:38023021(+) A-I intron -    15342557   //22327324 chr22:38023047(+) A-I intron -    15342557 chr22:38006548(+) A-I intron -    22327324 chr22:38006610(+) A-I intron -    22327324 chr22:38008088(+) A-I intron -    22327324 chr22:38008660(+) A-I intron -    22327324 chr22:38024014(+) A-I intron -    22327324 chr22:38024052(+) A-I intron -    22327324 chr22:38006381(+) A-I intron -    21960545 chr22:38006528(+) A-I intron -    21960545 chr22:38006563(+) A-I intron -    21960545 chr22:38006674(+) A-I intron -    21960545 chr22:38006847(+) A-I intron -    21960545 chr22:38007881(+) A-I intron -    21960545 chr22:38007885(+) A-I intron -    21960545 chr22:38008022(+) A-I intron -    21960545 chr22:38008056(+) A-I intron -    21960545 chr22:38008066(+) A-I intron -    21960545 chr22:38008151(+) A-I intron -    21960545 chr22:38008200(+) A-I intron -    21960545 chr22:38008210(+) A-I intron -    21960545 chr22:38008216(+) A-I intron -    21960545 chr22:38006420(+) A-G intron -    22484847 chr22:38006468(+) A-G intron -    22484847 chr22:38006480(+) A-G intron -    22484847 chr22:38006548(+) A-G intron -    22484847 chr22:38006557(+) A-G intron -    22484847 chr22:38006563(+) A-G intron -    22484847 chr22:38006609(+) A-G intron -    22484847 chr22:38006610(+) A-G intron -    22484847 chr22:38006661(+) A-G intron -    22484847 chr22:38006662(+) A-G intron -    22484847 chr22:38006674(+) A-G intron -    22484847 chr22:38007881(+) A-G intron -    22484847 chr22:38007885(+) A-G intron -    22484847 chr22:38007887(+) A-G intron -    22484847 chr22:38007894(+) C-T intron -    22484847 chr22:38007903(+) A-G intron -    22484847 chr22:38007904(+) A-G intron -    22484847 chr22:38007972(+) A-G intron -    22484847 chr22:38007973(+) A-G intron -    22484847 chr22:38007975(+) A-G intron -    22484847 chr22:38007981(+) A-G intron -    22484847 chr22:38007982(+) A-G intron -    22484847 chr22:38007994(+) A-G intron -    22484847 chr22:38007997(+) A-G intron -    22484847 chr22:38007998(+) A-G intron -    22484847 chr22:38007999(+) A-G intron -    22484847 chr22:38008014(+) A-G intron -    22484847 chr22:38008022(+) A-G intron -    22484847 chr22:38008056(+) A-G intron -    22484847 chr22:38008066(+) A-G intron -    22484847 chr22:38008088(+) A-G intron -    22484847 chr22:38008092(+) A-G intron -    22484847 chr22:38008146(+) A-G intron -    22484847 chr22:38008147(+) A-G intron -    22484847 chr22:38008200(+) A-G intron -    22484847 chr22:38008207(+) C-T intron -    22484847 chr22:38008210(+) A-G intron -    22484847 chr22:38008216(+) A-G intron -    22484847 chr22:38008217(+) A-G intron -    22484847 chr22:38008434(+) A-G intron -    22484847 chr22:38008590(+) A-G intron -    22484847 chr22:38008591(+) A-G intron -    22484847 chr22:38008618(+) A-G intron -    22484847 chr22:38008660(+) A-G intron -    22484847 chr22:38008735(+) C-T intron -    22484847 chr22:38008784(+) A-G intron -    22484847 chr22:38009680(+) A-G intron -    22484847 chr22:38015542(+) A-G intron -    22484847 chr22:38023021(+) A-G intron -    22484847 chr22:38023047(+) A-G intron -    22484847 chr22:38023963(+) A-G intron -    22484847 chr22:38023973(+) A-G intron -    22484847 chr22:38024014(+) A-G intron -    22484847 chr22:38024044(+) A-G intron -    22484847 chr22:38024052(+) A-G intron -    22484847 chr22:38024098(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GGA1	chr22:38004543-38004544(+) m6A 5'UTR       24284625 chr22:38004944-38004945(+) m6A 5'UTR//intron       25456834 chr22:38004950-38004951(+) m6A 5'UTR//intron       25456834 chr22:38005060-38005061(+) m6A 5'UTR//intron       25456834//24981863//22608085 chr22:38005078-38005079(+) m6A 5'UTR//exon//intron       25456834//24981863//22608085 chr22:38005177-38005178(+) m6A 5'UTR//exon//intron       22608085 chr22:38008982-38008983(+) m6A 5'UTR//intron       - chr22:38009035-38009036(+) m6A 5'UTR//intron       - chr22:38009045-38009046(+) m6A 5'UTR//intron       - chr22:38009085-38009086(+) m6A 5'UTR//intron       - chr22:38009097-38009098(+) m6A 5'UTR//intron       - chr22:38009147-38009148(+) m6A 5'UTR//exon//intron       - chr22:38009185-38009186(+) m6A 5'UTR//exon//intron       - chr22:38010271-38010272(+) m6A 5'UTR//CDS//exon       - chr22:38013065-38013066(+) m6A exon//intron       - chr22:38016259-38016260(+) m6A CDS       - chr22:38016278-38016279(+) m6A CDS       - chr22:38016280-38016281(+) Am CDS       - chr22:38016307-38016308(+) m6A CDS       - chr22:38017659-38017660(+) m6A CDS//exon       24981863 chr22:38019388-38019389(+) m6A CDS//exon       24981863 chr22:38019401-38019402(+) m6A CDS//exon       24981863 chr22:38019463-38019464(+) m6A CDS//exon       24981863 chr22:38019560-38019561(+) m6A CDS//exon       24981863 chr22:38019622-38019623(+) m6A CDS//exon       24981863 chr22:38020754-38020755(+) m6A exon//intron       - chr22:38025522-38025523(+) m6A CDS//exon       24284625 chr22:38026079-38026080(+) m6A CDS//exon       24284625 chr22:38026116-38026117(+) m6A CDS//exon       24284625 chr22:38026130-38026131(+) m6A CDS//exon       24284625 chr22:38026230-38026231(+) m6A exon//intron       24284625 chr22:38026947-38026948(+) m6A CDS//exon       24284625//24981863 chr22:38027101-38027102(+) m6A CDS//exon       24284625//24981863 chr22:38028068-38028069(+) m6A CDS//exon       24284625//24981863 chr22:38028655-38028656(+) m6A CDS//exon       24284625 chr22:38028680-38028681(+) m6A CDS//exon       24284625//25456834 chr22:38028700-38028701(+) m6A CDS       24284625//25456834 chr22:38028719-38028720(+) m6A 3'UTR       24284625//24209618//25456834 chr22:38028752-38028753(+) m6A 3'UTR       24284625//24209618//25456834 chr22:38028795-38028796(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:38028910-38028911(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:38028963-38028964(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:38028998-38028999(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:38029043-38029044(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr22:38029150-38029151(+) m6A 3'UTR       24284625 chr22:38029175-38029176(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3179	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Fibroblasts|Mesenchymal stem cells     -
	GGA1	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3179
Interactor2: GGA1

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	CDS
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.