Basic Information:

  VIRBase ID:  

HHID00072634

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3179:  MIMAT0015056          PHF3:  NM_001290259     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3179	PHF3
miRBase Accession/Entrez ID	MIMAT0015056	23469
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3179	rs1229893475 chr16:14901579    G/A rs1340262765 chr16:14901578    C/T rs1351100204 chr16:14901559    A/G rs1555527332 chr16:16300220    A/T rs1398613616 chr16:14901562    A/G rs1555527331 chr16:16300216    G/A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PHF3	chr6:64384777(+) A-I      intronic chr6:64385172(+) A-I      intronic chr6:64385241(+) A-I      intronic chr6:64385182(+) A-I      intronic chr6:64384674(+) A-I      intronic chr6:64384680(+) A-I      intronic chr6:64384730(+) A-I      intronic chr6:64384755(+) A-I      intronic chr6:64385137(+) A-I      intronic chr6:64385159(+) A-I      intronic chr6:64385160(+) A-I      intronic chr6:64385170(+) A-I      intronic chr6:64385171(+) A-I      intronic chr6:64385243(+) A-I      intronic chr6:64385244(+) A-I      intronic chr6:64385273(+) A-I      intronic chr6:64397223(+) A-I      intronic chr6:64397991(+) A-I      intronic chr6:64381765(+) A-I      intronic chr6:64397149(+) A-I      intronic chr6:64398330(+) A-I      intronic chr6:64397160(+) A-I      intronic chr6:64397202(+) A-I      intronic chr6:64397974(+) A-I      intronic chr6:64397919(+) A-I      intronic chr6:64398434(+) A-I      intronic chr6:64397964(+) A-I      intronic chr6:64398305(+) A-I      intronic chr6:64397063(+) A-I      intronic chr6:64398245(+) A-I      intronic chr6:64397214(+) A-I      intronic chr6:64398499(+) A-I      intronic chr6:64398290(+) A-I      intronic chr6:64397062(+) A-I      intronic chr6:64381909(+) A-I      intronic chr6:64397115(+) A-I      intronic chr6:64376980(+) A-I      intronic chr6:64397900(+) A-I      intronic chr6:64397042(+) A-I      intronic chr6:64387891(+) A-I      intronic chr6:64397255(+) A-I      intronic chr6:64398399(+) A-I      intronic chr6:64398477(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PHF3	chr6:64381747(+) A-G intron -    22484847 chr6:64381932(+) T-C intron -    22484847 chr6:64397042(+) A-G intron -    22484847 chr6:64397062(+) A-G intron -    22484847 chr6:64397205(+) A-G intron -    22484847 chr6:64397900(+) A-G intron -    22484847 chr6:64397919(+) A-G intron -    22484847 chr6:64397964(+) A-G intron -    22484847 chr6:64398365(+) A-G intron -    22484847 chr6:64398434(+) A-G intron -    22484847 chr6:64384729(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PHF3	chr6:64390002-64390003(+) m6A 3'UTR//5'UTR//CDS//intron       22608085 chr6:64394115-64394116(+) m6A 3'UTR//5'UTR//CDS//intron       24209618//24981863//27773535//22608085 chr6:64394144-64394145(+) m6A 3'UTR//5'UTR//CDS//intron       24209618//24981863//27773535//22575960//22608085 chr6:64394192-64394193(+) m6A 3'UTR//CDS//intron       24209618//24981863//27773535//22608085 chr6:64394237-64394238(+) m6A 3'UTR//CDS//intron       24209618//24981863//27773535//22608085 chr6:64394403-64394404(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr6:64394501-64394502(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr6:64394507-64394508(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr6:64394541-64394542(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr6:64394579-64394580(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64394595-64394596(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64394688-64394689(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64394695-64394696(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64394781-64394782(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64394788-64394789(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64394813-64394814(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64394881-64394882(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64394912-64394913(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr6:64394969-64394970(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr6:64395012-64395013(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64395019-64395020(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64395037-64395038(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64395089-64395090(+) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22575960//22608085 chr6:64395098-64395099(+) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22575960//22608085 chr6:64395121-64395122(+) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22575960//22608085 chr6:64395183-64395184(+) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085 chr6:64395272-64395273(+) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085 chr6:64395331-64395332(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085 chr6:64395357-64395358(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64395372-64395373(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64395449-64395450(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr6:64395468-64395469(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64395473-64395474(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64395497-64395498(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085 chr6:64395537-64395538(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085 chr6:64395566-64395567(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr6:64395602-64395603(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr6:64395608-64395609(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr6:64395617-64395618(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr6:64395628-64395629(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr6:64395765-64395766(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr6:64395797-64395798(+) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085 chr6:64395900-64395901(+) m6A 3'UTR//intron       24981863//22608085 chr6:64395920-64395921(+) m6A 3'UTR//intron       24981863//22608085 chr6:64395932-64395933(+) m6A 3'UTR//intron       24981863//22608085 chr6:64396192-64396193(+) m6A 3'UTR//intron       24981863 chr6:64401718-64401719(+) m6A 3'UTR//CDS       24981863//27773535//22608085 chr6:64401757-64401758(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr6:64401765-64401766(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr6:64401796-64401797(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr6:64401831-64401832(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr6:64401863-64401864(+) m6A 3'UTR//CDS       24981863//27773535//22608085 chr6:64401882-64401883(+) m6A 3'UTR//CDS       24981863//27773535//22608085 chr6:64404498-64404499(+) m6A 3'UTR//CDS       24981863//22608085 chr6:64404553-64404554(+) m6A 3'UTR//CDS       24981863 chr6:64410307-64410308(+) m6A 3'UTR//CDS       24981863//27773535//22608085 chr6:64410348-64410349(+) m6A 3'UTR//CDS       24981863//27773535//22608085 chr6:64412221-64412222(+) m6A exon//intron       24981863//27773535//22608085 chr6:64412268-64412269(+) m6A exon//intron       24981863//22608085 chr6:64412504-64412505(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr6:64413427-64413428(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr6:64413472-64413473(+) m6A 3'UTR//CDS//exon       24981863 chr6:64413523-64413524(+) m6A 3'UTR//CDS//exon       24981863 chr6:64413558-64413559(+) Tm 3'UTR//CDS//exon       - chr6:64421253-64421254(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22608085 chr6:64421488-64421489(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//22608085 chr6:64421497-64421498(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//22608085 chr6:64421533-64421534(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64421582-64421583(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr6:64421719-64421720(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085 chr6:64421742-64421743(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085 chr6:64421761-64421762(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085 chr6:64421782-64421783(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085 chr6:64421797-64421798(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085 chr6:64421869-64421870(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085 chr6:64421950-64421951(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085 chr6:64421955-64421956(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085 chr6:64421990-64421991(+) m6A 3'UTR//CDS//intron       24284625//24981863//26404942//27773535//22575960//22608085 chr6:64422011-64422012(+) m6A 3'UTR//CDS//intron       24284625//24981863//26404942//27773535//22575960//22608085 chr6:64422042-64422043(+) m6A 3'UTR//CDS//intron       24284625//24981863//26404942//27773535//22575960//22608085 chr6:64422107-64422108(+) m6A 3'UTR//CDS//intron       24284625//24981863//22608085 chr6:64422226-64422227(+) m6A 3'UTR//CDS//intron       24284625//24981863//22608085 chr6:64422236-64422237(+) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085 chr6:64422257-64422258(+) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085 chr6:64422268-64422269(+) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085 chr6:64422311-64422312(+) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085 chr6:64422354-64422355(+) m6A 3'UTR//CDS//intron       25456834//24981863//27773535//22608085 chr6:64422384-64422385(+) m6A 3'UTR//CDS//intron       25456834//24981863//22608085 chr6:64422517-64422518(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64422562-64422563(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64422603-64422604(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64422645-64422646(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64422663-64422664(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64422671-64422672(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64422685-64422686(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64422694-64422695(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64422731-64422732(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64422789-64422790(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64422854-64422855(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64422864-64422865(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:64423149-64423150(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423197-64423198(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423239-64423240(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423332-64423333(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr6:64423344-64423345(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr6:64423350-64423351(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr6:64423356-64423357(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr6:64423366-64423367(+) Cm 3'UTR//CDS//intron       - chr6:64423424-64423425(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423461-64423462(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423477-64423478(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423491-64423492(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423503-64423504(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423525-64423526(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423545-64423546(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423572-64423573(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423586-64423587(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423663-64423664(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:64423729-64423730(+) m6A 3'UTR//intron       24284625//26404942//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3179	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Fibroblasts|Mesenchymal stem cells     -
	PHF3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3179
Interactor2: PHF3

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.