Detail Information

Basic Information:


  VIRBase ID:  

HHID00072625

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3179:           POLR3C:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3179 POLR3C
miRBase
Accession/Entrez ID		 MIMAT0015056 10623
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C82//RPC3//RPC62

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3179
rs1229893475 chr16:14901579    G/A
rs1340262765 chr16:14901578    C/T
rs1351100204 chr16:14901559    A/G
rs1555527332 chr16:16300220    A/T
rs1398613616 chr16:14901562    A/G
rs1555527331 chr16:16300216    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR POLR3C
chr1:145597979(-) A-I      intronic
chr1:145599827(-) A-I      intronic
chr1:145597980(-) A-I      intronic
chr1:145598003(-) A-I      intronic
chr1:145599868(-) A-I      intronic
chr1:145600200(-) A-I      intronic
chr1:145599841(-) A-I      intronic
chr1:145597978(-) A-I      intronic
chr1:145597973(-) A-I      intronic
chr1:145600233(-) A-I      intronic
chr1:145599849(-) A-I      intronic
chr1:145599825(-) A-I      intronic
chr1:145594693(-) A-I      intronic
chr1:145599786(-) A-I      intronic
chr1:145598756(-) A-I      intronic
chr1:145599759(-) A-I      intronic
chr1:145594691(-) A-I      intronic
chr1:145599705(-) A-I      intronic
chr1:145597993(-) A-I      intronic
chr1:145599353(-) A-I      intronic
chr1:145599284(-) A-I      intronic
chr1:145597981(-) A-I      intronic
chr1:145599477(-) A-I      intronic
chr1:145599466(-) A-I      intronic
chr1:145598926(-) A-I      intronic
chr1:145599395(-) A-I      intronic
chr1:145598890(-) A-I      intronic
chr1:145597878(-) A-I      intronic
chr1:145599389(-) A-I      intronic
chr1:145599371(-) A-I      intronic
chr1:145600551(-) A-I      intronic
chr1:145597859(-) A-I      intronic
chr1:145600197(-) A-I      intronic
chr1:145600181(-) A-I      intronic
chr1:145597858(-) A-I      intronic
chr1:145600094(-) A-I      intronic
chr1:145598889(-) A-I      intronic
chr1:145600086(-) A-I      intronic
chr1:145598816(-) A-I      intronic
chr1:145594825(-) A-I      intronic
chr1:145600045(-) A-I      intronic
chr1:145600011(-) A-I      intronic
chr1:145599911(-) A-I      intronic
chr1:145597885(-) A-I      intronic
chr1:145600155(-) A-I      intronic
chr1:145599397(-) A-I      intronic
chr1:145602164(-) A-I      intronic
chr1:145599391(-) A-I      intronic
chr1:145598886(-) A-I      intronic
chr1:145598872(-) A-I      intronic
chr1:145598788(-) A-I      intronic
chr1:145598896(-) A-I      intronic
chr1:145599356(-) A-I      intronic
chr1:145600186(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase POLR3C
chr1:145592695-145592696(-) m6A 3'UTR//CDS       24981863//27773535
chr1:145592739-145592740(-) m6A 3'UTR//CDS       24981863//27773535
chr1:145594060-145594061(-) m6A CDS//intron       24981863
chr1:145595161-145595162(-) m6A CDS//exon//intron       27773535
chr1:145595183-145595184(-) m6A CDS//exon//intron       27773535
chr1:145595200-145595201(-) m6A CDS//exon//intron       27773535
chr1:145595207-145595208(-) m6A CDS//exon//intron       27773535
chr1:145595334-145595335(-) m6A exon//intron       27773535
chr1:145595358-145595359(-) m6A exon//intron       27773535
chr1:145595388-145595389(-) m6A exon//intron       27773535
chr1:145601751-145601752(-) m6A CDS//exon       27773535
chr1:145606301-145606302(-) m6A CDS//exon       24981863//27773535
chr1:145608120-145608121(-) m6A CDS//exon       24981863//27773535
chr1:145608139-145608140(-) m6A CDS//exon       27773535
chr1:145610675-145610676(-) m6A exon//intron       -
chr1:145610693-145610694(-) m6A exon//intron       24981863
chr1:145610701-145610702(-) m6A exon//intron       24981863
chr1:145610922-145610923(-) m6A 5'UTR//exon       24284625//24981863//27773536
chr1:145610990-145610991(-) m6A exon       25456834//24981863//27371828//27773536
chr1:145611018-145611019(-) m6A exon       25456834//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3179
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
POLR3C
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3179
Interactor2: POLR3C

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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