Basic Information:

  VIRBase ID:  

HHID00072618

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3179:  MIMAT0015056          UTP14C:  NM_021645     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3179	UTP14C
miRBase Accession/Entrez ID	MIMAT0015056	9724
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	2700066J21Rik//KIAA0266//UTP14B

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3179	rs1229893475 chr16:14901579    G/A rs1340262765 chr16:14901578    C/T rs1351100204 chr16:14901559    A/G rs1555527332 chr16:16300220    A/T rs1398613616 chr16:14901562    A/G rs1555527331 chr16:16300216    G/A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	UTP14C	chr13:52604244(+) A-I      NonSyn:Asn->Ser chr13:52604217(+) A-I      NonSyn:Gln->Arg chr13:52604985(+) A-I      NonSyn:Gln->Arg chr13:52604880(+) A-I      NonSyn:Gln->Arg chr13:52604264(+) A-I      NonSyn:Ser->Gly chr13:52604539(+) A-I      Syn:Gly->Gly chr13:52603147(+) A-I      Syn:Lys->Lys chr13:52607034(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	UTP14C	chr13:52603801(+) A-I intron -    22327324 chr13:52603919(+) A-I intron -    22327324 chr13:52604248(+) A-I intron -    22327324 chr13:52604264(+) A-I intron -    22327324 chr13:52604539(+) A-I intron -    22327324 chr13:52604705(+) A-I intron -    22327324 chr13:52604710(+) A-I intron -    22327324 chr13:52604880(+) A-I intron -    22327324 chr13:52604946(+) A-I intron -    22327324 chr13:52604985(+) A-I intron -    22327324 chr13:52605014(+) A-I intron -    22327324 chr13:52606101(+) G-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	UTP14C	chr13:52598879-52598880(+) m6A 5'UTR       24284625//24209618//24981863//27773535//22608085 chr13:52598918-52598919(+) m6A 5'UTR       24284625//24209618//24981863//27773535//22608085 chr13:52598929-52598930(+) m6A 5'UTR       24284625//24209618//24981863//27773535//22608085 chr13:52598989-52598990(+) m6A 5'UTR       24284625//24209618//24981863//27773535//22608085 chr13:52602574-52602575(+) m1A 5'UTR       26863410//26863196 chr13:52602577-52602578(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr13:52602588-52602589(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr13:52602626-52602627(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr13:52602761-52602762(+) m6A 5'UTR       24981863//22608085 chr13:52602770-52602771(+) m6A 5'UTR       24981863//22608085 chr13:52602835-52602836(+) m6A 5'UTR       24284625//24981863//22608085 chr13:52602839-52602840(+) m6A 5'UTR       24284625 chr13:52602950-52602951(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr13:52602990-52602991(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr13:52603010-52603011(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr13:52603043-52603044(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr13:52603222-52603223(+) m6A CDS       24284625//24209618//24981863//22608085 chr13:52603314-52603315(+) m6A CDS       24284625//24209618//24981863//22608085 chr13:52603345-52603346(+) m6A CDS       24284625//24209618//24981863//26404942//22608085 chr13:52603370-52603371(+) m6A CDS       24284625//24209618//24981863//26404942//22608085 chr13:52603388-52603389(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr13:52603452-52603453(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr13:52603480-52603481(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr13:52603520-52603521(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr13:52603838-52603839(+) m6A CDS       24284625//24981863//27773535//22608085 chr13:52603911-52603912(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr13:52603925-52603926(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr13:52603932-52603933(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr13:52603944-52603945(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr13:52603998-52603999(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr13:52604046-52604047(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr13:52604108-52604109(+) m6A CDS       24284625//25456834//24981863//22608085 chr13:52604169-52604170(+) m6A CDS       24284625//25456834//24981863//22608085 chr13:52604275-52604276(+) m6A CDS       24284625//25456834//24981863//22608085 chr13:52604343-52604344(+) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr13:52604380-52604381(+) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr13:52604406-52604407(+) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr13:52604427-52604428(+) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr13:52604461-52604462(+) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr13:52604523-52604524(+) m6A CDS       24284625//24981863//27773535//22608085 chr13:52604538-52604539(+) m6A CDS       24284625//24981863//27773535//22608085 chr13:52604554-52604555(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr13:52604621-52604622(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr13:52604705-52604706(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr13:52604810-52604811(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr13:52605028-52605029(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr13:52605037-52605038(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr13:52605059-52605060(+) m6A CDS       24284625//24209618//24981863//22608085 chr13:52605173-52605174(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr13:52605234-52605235(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr13:52605327-52605328(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr13:52605419-52605420(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr13:52605427-52605428(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr13:52605460-52605461(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr13:52605521-52605522(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr13:52605568-52605569(+) m6A 3'UTR       24981863//22608085 chr13:52606279-52606280(+) m6A 3'UTR       24981863 chr13:52606346-52606347(+) m6A 3'UTR       24981863 chr13:52606802-52606803(+) m6A 3'UTR       22608085 chr13:52606876-52606877(+) m6A 3'UTR       24284625//24981863//26404942//22608085 chr13:52606901-52606902(+) m6A 3'UTR       24284625//24981863//26404942//22608085 chr13:52606945-52606946(+) m6A 3'UTR       24284625//24981863//26404942//22608085 chr13:52606951-52606952(+) m6A 3'UTR       24284625//24981863//26404942//22608085 chr13:52607095-52607096(+) m6A 3'UTR       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3179	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Fibroblasts|Mesenchymal stem cells     -
	UTP14C	Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3179
Interactor2: UTP14C

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.