Basic Information:

  VIRBase ID:  

HHID00072617

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3179:  MIMAT0015056          AQR:  NM_014691     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3179	AQR
miRBase Accession/Entrez ID	MIMAT0015056	9716
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	fSAP164//IBP160

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3179	rs1229893475 chr16:14901579    G/A rs1340262765 chr16:14901578    C/T rs1351100204 chr16:14901559    A/G rs1555527332 chr16:16300220    A/T rs1398613616 chr16:14901562    A/G rs1555527331 chr16:16300216    G/A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	AQR	chr15:35229413(-) A-I      intronic chr15:35214156(-) A-I      intronic chr15:35214140(-) A-I      intronic chr15:35191688(-) A-I      intronic chr15:35214091(-) A-I      intronic chr15:35214090(-) A-I      intronic chr15:35241414(-) A-I      intronic chr15:35241413(-) A-I      intronic chr15:35241399(-) A-I      intronic chr15:35241389(-) A-I      intronic chr15:35241388(-) A-I      intronic chr15:35191676(-) A-I      intronic chr15:35191656(-) A-I      intronic chr15:35241291(-) A-I      intronic chr15:35229406(-) A-I      intronic chr15:35229399(-) A-I      intronic chr15:35223845(-) A-I      intronic chr15:35223842(-) A-I      intronic chr15:35241340(-) A-I      intronic chr15:35241299(-) A-I      intronic chr15:35192263(-) A-I      intronic chr15:35242383(-) A-I      intronic chr15:35242376(-) A-I      intronic chr15:35207575(-) A-I      intronic chr15:35242568(-) A-I      intronic chr15:35246413(-) A-I      intronic chr15:35242562(-) A-I      intronic chr15:35253645(-) A-I      intronic chr15:35241653(-) A-I      intronic chr15:35241710(-) A-I      intronic chr15:35246345(-) A-I      intronic chr15:35242387(-) A-I      intronic chr15:35246399(-) A-I      intronic chr15:35246355(-) A-I      intronic chr15:35253639(-) A-I      intronic chr15:35253556(-) A-I      intronic chr15:35246276(-) A-I      intronic chr15:35250660(-) A-I      intronic chr15:35250623(-) A-I      intronic chr15:35242561(-) A-I      intronic chr15:35242388(-) A-I      intronic chr15:35192270(-) A-I      intronic chr15:35191672(-) A-I      intronic chr15:35241937(-) A-I      intronic chr15:35254443(-) A-I      intronic chr15:35171198(-) A-I      intronic chr15:35254767(-) A-I      intronic chr15:35192166(-) A-I      intronic chr15:35171223(-) A-I      intronic chr15:35250261(-) A-I      intronic chr15:35247107(-) A-I      intronic chr15:35241910(-) A-I      intronic chr15:35243724(-) A-I      intronic chr15:35249496(-) A-I      intronic chr15:35241955(-) A-I      intronic chr15:35243792(-) A-I      intronic chr15:35170406(-) A-I      intronic chr15:35240918(-) A-I      intronic chr15:35246725(-) A-I      intronic chr15:35170423(-) A-I      intronic chr15:35191112(-) A-I      intronic chr15:35192250(-) A-I      intronic chr15:35241985(-) A-I      intronic chr15:35249495(-) A-I      intronic chr15:35249466(-) A-I      intronic chr15:35192313(-) A-I      intronic chr15:35241994(-) A-I      intronic chr15:35253662(-) A-I      intronic chr15:35181977(-) A-I      intronic chr15:35243677(-) A-I      intronic chr15:35223176(-) A-I      intronic chr15:35242129(-) A-I      intronic chr15:35214110(-) A-I      intronic chr15:35190896(-) A-I      intronic chr15:35242043(-) A-I      intronic chr15:35241361(-) A-I      intronic chr15:35242098(-) A-I      intronic chr15:35247322(-) A-I      intronic chr15:35192311(-) A-I      intronic chr15:35242464(-) A-I      intronic chr15:35242556(-) A-I      intronic chr15:35231541(-) A-I      intronic chr15:35246585(-) A-I      intronic chr15:35246735(-) A-I      intronic chr15:35249463(-) A-I      intronic chr15:35249455(-) A-I      intronic chr15:35240742(-) A-I      intronic chr15:35246290(-) A-I      intronic chr15:35190937(-) A-I      intronic chr15:35223758(-) A-I      intronic chr15:35259215(-) A-I      intronic chr15:35259189(-) A-I      intronic chr15:35259186(-) A-I      intronic chr15:35248753(-) A-I      intronic chr15:35226137(-) A-I      intronic chr15:35256092(-) A-I      intronic chr15:35256039(-) A-I      intronic chr15:35247112(-) A-I      intronic chr15:35223209(-) A-I      intronic chr15:35247320(-) A-I      intronic chr15:35247262(-) A-I      intronic chr15:35247224(-) A-I      intronic chr15:35254969(-) A-I      intronic chr15:35254822(-) A-I      intronic chr15:35254804(-) A-I      intronic chr15:35160410(-) A-I      intronic chr15:35246803(-) A-I      intronic chr15:35240844(-) A-I      intronic chr15:35254778(-) A-I      intronic chr15:35190963(-) A-I      intronic chr15:35171177(-) A-I      intronic chr15:35209949(-) A-I      intronic chr15:35246575(-) A-I      intronic chr15:35254326(-) A-I      intronic chr15:35246296(-) A-I      intronic chr15:35209954(-) A-I      intronic chr15:35207963(-) A-I      intronic chr15:35171129(-) A-I      intronic chr15:35209966(-) A-I      intronic chr15:35171066(-) A-I      intronic chr15:35213059(-) A-I      intronic chr15:35213123(-) A-I      intronic chr15:35247202(-) A-I      intronic chr15:35213133(-) A-I      intronic chr15:35243828(-) A-I      intronic chr15:35213431(-) A-I      intronic chr15:35213552(-) A-I      intronic chr15:35214120(-) A-I      intronic chr15:35214264(-) A-I      intronic chr15:35214280(-) A-I      intronic chr15:35247196(-) A-I      intronic chr15:35171063(-) A-I      intronic chr15:35214791(-) A-I      intronic chr15:35223166(-) A-I      intronic chr15:35223170(-) A-I      intronic chr15:35247184(-) A-I      intronic chr15:35223198(-) A-I      intronic chr15:35223304(-) A-I      intronic chr15:35228865(-) A-I      intronic chr15:35228903(-) A-I      intronic chr15:35207592(-) A-I      intronic chr15:35246404(-) A-I      intronic chr15:35247161(-) A-I      intronic chr15:35229371(-) A-I      intronic chr15:35229433(-) A-I      intronic chr15:35229812(-) A-I      intronic chr15:35229912(-) A-I      intronic chr15:35229936(-) A-I      intronic chr15:35229947(-) A-I      intronic chr15:35191677(-) A-I      intronic chr15:35229967(-) A-I      intronic chr15:35254278(-) A-I      intronic chr15:35229973(-) A-I      intronic chr15:35229998(-) A-I      intronic chr15:35238389(-) A-I      intronic chr15:35238396(-) A-I      intronic chr15:35254759(-) A-I      intronic chr15:35240748(-) A-I      intronic chr15:35240889(-) A-I      intronic chr15:35240901(-) A-I      intronic chr15:35241311(-) A-I      intronic chr15:35241326(-) A-I      intronic chr15:35241627(-) A-I      intronic chr15:35241644(-) A-I      intronic chr15:35246780(-) A-I      intronic chr15:35246732(-) A-I      intronic chr15:35254451(-) A-I      intronic chr15:35190973(-) A-I      intronic chr15:35241647(-) A-I      intronic chr15:35171057(-) A-I      intronic chr15:35168160(-) A-I      Syn:Glu->Glu chr15:35241332(-) A-I      intronic chr15:35214935(-) A-I      intronic chr15:35229410(-) A-I      intronic chr15:35242091(-) A-I      intronic chr15:35254821(-) A-I      intronic chr15:35249454(-) A-I      intronic chr15:35247103(-) A-I      intronic chr15:35240114(-) A-I      intronic chr15:35246299(-) A-I      intronic chr15:35223242(-) A-I      intronic chr15:35250459(-) A-I      intronic chr15:35241568(-) A-I      intronic chr15:35212995(-) A-I      intronic chr15:35250654(-) A-I      intronic chr15:35214308(-) A-I      intronic chr15:35229922(-) A-I      intronic chr15:35255429(-) A-I      intronic chr15:35207980(-) A-I      intronic chr15:35229377(-) A-I      intronic chr15:35229499(-) A-I      intronic chr15:35241505(-) A-I      intronic chr15:35229840(-) A-I      intronic chr15:35223215(-) A-I      intronic chr15:35254765(-) A-I      intronic chr15:35232474(-) A-I      intronic chr15:35207586(-) A-I      intronic chr15:35247272(-) A-I      intronic chr15:35241256(-) A-I      intronic chr15:35163631(-) A-I      intronic chr15:35242131(-) A-I      intronic chr15:35251502(-) A-I      intronic chr15:35241331(-) A-I      intronic chr15:35225016(-) A-I      intronic chr15:35241228(-) A-I      intronic chr15:35214277(-) A-I      intronic chr15:35230569(-) A-I      intronic chr15:35240946(-) A-I      intronic chr15:35254807(-) A-I      intronic chr15:35247068(-) A-I      intronic chr15:35246658(-) A-I      intronic chr15:35254299(-) A-I      intronic chr15:35255475(-) A-I      intronic chr15:35214206(-) A-I      intronic chr15:35150105(-) A-I      intronic chr15:35254711(-) A-I      intronic chr15:35240879(-) A-I      intronic chr15:35191845(-) A-I      intronic chr15:35230578(-) A-I      intronic chr15:35214214(-) A-I      intronic chr15:35207989(-) A-I      intronic chr15:35243760(-) A-I      intronic chr15:35191700(-) A-I      intronic chr15:35254403(-) A-I      intronic chr15:35240972(-) A-I      intronic chr15:35213472(-) A-I      intronic chr15:35223221(-) A-I      intronic chr15:35241402(-) A-I      intronic chr15:35230703(-) A-I      intronic chr15:35239979(-) A-I      intronic chr15:35240951(-) A-I      intronic chr15:35223309(-) A-I      intronic chr15:35223836(-) A-I      intronic chr15:35229498(-) A-I      intronic chr15:35247241(-) A-I      intronic chr15:35239933(-) A-I      intronic chr15:35254412(-) A-I      intronic chr15:35256069(-) A-I      intronic chr15:35241305(-) A-I      intronic chr15:35240838(-) A-I      intronic chr15:35230038(-) A-I      intronic chr15:35192167(-) A-I      intronic chr15:35229367(-) A-I      intronic chr15:35191642(-) A-I      intronic chr15:35247158(-) A-I      intronic chr15:35192231(-) A-I      intronic chr15:35254402(-) A-I      intronic chr15:35192218(-) A-I      intronic chr15:35207921(-) A-I      intronic chr15:35149943(-) A-I      intronic chr15:35223926(-) A-I      intronic chr15:35223310(-) A-I      intronic chr15:35241315(-) A-I      intronic chr15:35214938(-) A-I      intronic chr15:35223825(-) A-I      intronic chr15:35246305(-) A-I      intronic chr15:35170419(-) A-I      intronic chr15:35230586(-) A-I      intronic chr15:35214109(-) A-I      intronic chr15:35192310(-) A-I      intronic chr15:35229415(-) A-I      intronic chr15:35192258(-) A-I      intronic chr15:35191613(-) A-I      intronic chr15:35231434(-) A-I      intronic chr15:35250569(-) A-I      intronic chr15:35207520(-) A-I      intronic chr15:35254387(-) A-I      intronic chr15:35249748(-) A-I      intronic chr15:35241358(-) A-I      intronic chr15:35241261(-) A-I      intronic chr15:35223218(-) A-I      intronic chr15:35170465(-) A-I      intronic chr15:35240133(-) A-I      intronic chr15:35212970(-) A-I      intronic chr15:35229493(-) A-I      intronic chr15:35229271(-) A-I      intronic chr15:35207570(-) A-I      intronic chr15:35242173(-) A-I      intronic chr15:35249537(-) A-I      intronic chr15:35253648(-) A-I      intronic chr15:35213001(-) A-I      intronic chr15:35247200(-) A-I      intronic chr15:35223897(-) A-I      intronic chr15:35257615(-) A-I      intronic chr15:35246685(-) A-I      intronic chr15:35241567(-) A-I      intronic chr15:35229403(-) A-I      intronic chr15:35247310(-) A-I      intronic chr15:35229937(-) A-I      intronic chr15:35231540(-) A-I      intronic chr15:35247261(-) A-I      intronic chr15:35242072(-) A-I      intronic chr15:35216743(-) A-I      intronic chr15:35230490(-) A-I      intronic chr15:35242429(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	AQR	chr15:35192258(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	AQR	chr15:35145114-35145115(-) m6A 3'UTR       - chr15:35148605-35148606(-) m6A 3'UTR       24981863//27773535 chr15:35148646-35148647(-) m6A 3'UTR       24981863//27773535 chr15:35148965-35148966(-) m6A 3'UTR//exon       24284625//24981863//22608085 chr15:35148987-35148988(-) m6A 3'UTR//exon       24284625//24981863//22608085 chr15:35149000-35149001(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085 chr15:35149081-35149082(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//27371828//22608085 chr15:35149126-35149127(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//27371828//22608085 chr15:35149147-35149148(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085 chr15:35149162-35149163(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085 chr15:35149182-35149183(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085 chr15:35149234-35149235(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085 chr15:35149246-35149247(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085 chr15:35152262-35152263(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr15:35152297-35152298(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr15:35152344-35152345(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr15:35155088-35155089(-) m6A 3'UTR//CDS//exon       27773535 chr15:35161905-35161906(-) m6A exon//intron       27773535 chr15:35161936-35161937(-) m6A exon//intron       27773535 chr15:35161990-35161991(-) m6A exon//intron       27773535 chr15:35189798-35189799(-) Y 3'UTR//CDS       26075521 chr15:35192978-35192979(-) m6A 3'UTR//CDS       27773535 chr15:35193041-35193042(-) m6A 3'UTR//CDS       27773535 chr15:35193051-35193052(-) m6A 3'UTR//CDS       27773535 chr15:35196557-35196558(-) m6A 3'UTR//CDS       24981863//27773535 chr15:35196583-35196584(-) m6A 3'UTR//CDS       24981863//27773535 chr15:35196642-35196643(-) m6A CDS       24981863//27773535 chr15:35196667-35196668(-) m6A CDS       24981863//27773535 chr15:35196692-35196693(-) m6A CDS       24981863//27773535 chr15:35196698-35196699(-) m6A CDS       24981863//27773535 chr15:35261878-35261879(-) m6A 5'UTR       24284625//24981863//27773535 chr15:35261960-35261961(-) m6A 5'UTR       24981863 chr15:35262026-35262027(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3179	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Fibroblasts|Mesenchymal stem cells     -
	AQR	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3179
Interactor2: AQR

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	CDS
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.