Detail Information

Basic Information:


  VIRBase ID:  

HHID00072594

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3179:           CD200:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3179 CD200
miRBase
Accession/Entrez ID		 MIMAT0015056 4345
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - MOX1//MOX2//MRC//OX-2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3179
rs1229893475 chr16:14901579    G/A
rs1340262765 chr16:14901578    C/T
rs1351100204 chr16:14901559    A/G
rs1555527332 chr16:16300220    A/T
rs1398613616 chr16:14901562    A/G
rs1555527331 chr16:16300216    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CD200
chr3:112080082(+) A-I      intronic
chr3:112079081(+) A-I      intronic
chr3:112080102(+) A-I      intronic
chr3:112079100(+) A-I      intronic
chr3:112079096(+) A-I      intronic
chr3:112078965(+) A-I      intronic
chr3:112079109(+) A-I      intronic
chr3:112079004(+) A-I      intronic
chr3:112078993(+) A-I      intronic
chr3:112080010(+) A-I      intronic
chr3:112078920(+) A-I      intronic
chr3:112079038(+) A-I      intronic
chr3:112076029(+) A-I      intronic
chr3:112079917(+) A-I      intronic
chr3:112079984(+) A-I      intronic
chr3:112080023(+) A-I      intronic
chr3:112080025(+) A-I      intronic
chr3:112079906(+) A-I      intronic
chr3:112079919(+) A-I      intronic
chr3:112080129(+) A-I      intronic
chr3:112079970(+) A-I      intronic
chr3:112080128(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CD200
chr3:112065147(+) T-G intron -    22484847
chr3:112080061(+) A-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CD200
chr3:112051360-112051361(+) m6A 5'UTR       25456834
chr3:112051416-112051417(+) m6A 5'UTR       25456834
chr3:112051429-112051430(+) m6A 5'UTR       25456834
chr3:112051514-112051515(+) m6A 5'UTR       25456834
chr3:112063934-112063935(+) m6A 5'UTR//CDS       25456834//24981863
chr3:112063955-112063956(+) m6A CDS       25456834//24981863
chr3:112063988-112063989(+) m6A CDS       25456834//24981863
chr3:112063997-112063998(+) m6A CDS       24209618//25456834//24981863
chr3:112064013-112064014(+) m6A CDS       24209618//25456834//24981863
chr3:112064021-112064022(+) m6A CDS       24209618//25456834//24981863
chr3:112066443-112066444(+) m6A 3'UTR//CDS       -
chr3:112080489-112080490(+) m6A 3'UTR       24981863
chr3:112080663-112080664(+) m6A 3'UTR       24981863
chr3:112080696-112080697(+) m6A 3'UTR       24981863
chr3:112080722-112080723(+) m6A 3'UTR       24981863
chr3:112081077-112081078(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3179
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
CD200
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3179
Interactor2: CD200

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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