Detail Information

Basic Information:


  VIRBase ID:  

HHID00072552

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3174:           ZFP62:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3174 ZFP62
miRBase
Accession/Entrez ID		 MIMAT0015051 643836
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ZET//ZNF755

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3174
rs1159846130 chr15:90006777    A/G
rs1295514792 chr15:90006764    T/TGTTAGAGATGC
rs775051847 chr15:90006779    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZFP62
chr5:180285526(-) A-I      intronic
chr5:180284646(-) A-I      intronic
chr5:180284699(-) A-I      intronic
chr5:180285545(-) A-I      intronic
chr5:180283872(-) A-I      intronic
chr5:180285388(-) A-I      intronic
chr5:180284626(-) A-I      intronic
chr5:180285087(-) A-I      intronic
chr5:180283790(-) A-I      intronic
chr5:180284594(-) A-I      intronic
chr5:180284528(-) A-I      intronic
chr5:180285194(-) A-I      intronic
chr5:180285387(-) A-I      intronic
chr5:180285394(-) A-I      intronic
chr5:180285491(-) A-I      intronic
chr5:180283787(-) A-I      intronic
chr5:180284595(-) A-I      intronic
chr5:180284529(-) A-I      intronic
chr5:180284666(-) A-I      intronic
chr5:180285149(-) A-I      intronic
chr5:180283842(-) A-I      intronic
chr5:180284729(-) A-I      intronic
chr5:180285370(-) A-I      intronic
chr5:180283951(-) A-I      intronic
chr5:180285546(-) A-I      intronic
chr5:180284665(-) A-I      intronic
chr5:180284701(-) A-I      intronic
chr5:180284534(-) A-I      intronic
chr5:180285135(-) A-I      intronic
chr5:180285455(-) A-I      intronic
chr5:180285454(-) A-I      intronic
chr5:180284676(-) A-I      intronic
chr5:180285471(-) A-I      intronic
chr5:180284668(-) A-I      intronic
chr5:180285525(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZFP62
chr5:180284529(-) A-G intron -    22484847
chr5:180284534(-) A-G intron -    22484847
chr5:180284574(-) A-G intron -    22484847
chr5:180284594(-) A-G intron -    22484847
chr5:180284595(-) A-G intron -    22484847
chr5:180284636(-) A-G intron -    22484847
chr5:180284662(-) A-G intron -    22484847
chr5:180284665(-) A-G intron -    22484847
chr5:180284666(-) A-G intron -    22484847
chr5:180284668(-) A-G intron -    22484847
chr5:180284676(-) A-G intron -    22484847
chr5:180284701(-) A-G intron -    22484847
chr5:180284729(-) A-G intron -    22484847
chr5:180284770(-) A-G intron -    22484847
chr5:180285087(-) A-G intron -    22484847
chr5:180285149(-) A-G intron -    22484847
chr5:180285171(-) A-G intron -    22484847
chr5:180285244(-) A-G intron -    22484847
chr5:180285256(-) A-G intron -    22484847
chr5:180285387(-) A-G intron -    22484847
chr5:180285394(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZFP62
chr5:180274741-180274742(-) m6A 3'UTR//exon       27773535
chr5:180274951-180274952(-) m6A 3'UTR//exon       24284625//24981863//28052920//27773535//27371828//22608085
chr5:180275071-180275072(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr5:180275093-180275094(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr5:180275186-180275187(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr5:180275227-180275228(-) m6A 3'UTR//intron       24284625//27773535//22608085
chr5:180275274-180275275(-) m6A 3'UTR//intron       27773535
chr5:180275359-180275360(-) m6A 3'UTR//intron       27773535
chr5:180275497-180275498(-) m6A 3'UTR//intron       24981863
chr5:180275504-180275505(-) m6A 3'UTR//intron       24981863
chr5:180275514-180275515(-) m6A 3'UTR//intron       24981863//22608085
chr5:180275562-180275563(-) m6A 3'UTR//intron       24981863//22608085
chr5:180275584-180275585(-) m6A 3'UTR//intron       24981863//22608085
chr5:180275687-180275688(-) m6A 3'UTR//intron       22608085
chr5:180275763-180275764(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr5:180275844-180275845(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr5:180275913-180275914(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr5:180276145-180276146(-) m6A CDS//intron       24981863//27773535//22608085
chr5:180276191-180276192(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr5:180276229-180276230(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr5:180276313-180276314(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr5:180276351-180276352(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085
chr5:180276399-180276400(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085
chr5:180276527-180276528(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr5:180276565-180276566(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr5:180276677-180276678(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr5:180276687-180276688(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr5:180276901-180276902(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr5:180276931-180276932(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr5:180277069-180277070(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr5:180277115-180277116(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:180277153-180277154(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr5:180277173-180277174(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:180277321-180277322(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr5:180277367-180277368(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr5:180277405-180277406(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr5:180277489-180277490(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr5:180277527-180277528(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr5:180277573-180277574(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr5:180277629-180277630(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr5:180277703-180277704(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr5:180277772-180277773(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:180277823-180277824(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:180277853-180277854(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:180277965-180277966(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:180278094-180278095(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr5:180278121-180278122(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:180278132-180278133(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:180278167-180278168(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:180278181-180278182(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:180278242-180278243(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:180278247-180278248(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:180278303-180278304(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:180278318-180278319(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:180278458-180278459(-) m6A 5'UTR//CDS//exon       24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3174
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
ZFP62
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3174
Interactor2: ZFP62

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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