Basic Information:

  VIRBase ID:  

HHID00072363

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3158-3p:  MIMAT0015032          CHPF2:  NR_171547     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3158-3p	CHPF2
miRBase Accession/Entrez ID	MIMAT0015032	54480
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	chPF-2//ChSy-3//CSGLCA-T//CSGlcAT

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3158-3p	rs1041729019 chr10:101601476    T/A rs1041729019 chr10:101601476    T/C rs1158451377 chr10:101601468    G/A rs1417820438 chr10:101601471    C/T rs548867129 chr10:101601469    G/C rs780888219 chr10:101601446    C/T

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CHPF2	chr7:150929582-150929583(+) m6A 5'UTR       24981863 chr7:150929744-150929745(+) m6A 5'UTR       24284625 chr7:150929790-150929791(+) m6A 5'UTR       24284625 chr7:150930033-150930034(+) m6A 5'UTR//intron       24284625 chr7:150930063-150930064(+) m6A 5'UTR//intron       24284625 chr7:150930406-150930407(+) m6A 5'UTR//intron       24284625 chr7:150930435-150930436(+) m6A 5'UTR//intron       24284625 chr7:150930485-150930486(+) m6A 5'UTR//intron       24284625 chr7:150930804-150930805(+) m6A 5'UTR//intron       - chr7:150930917-150930918(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr7:150930922-150930923(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr7:150931007-150931008(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr7:150931281-150931282(+) m6A CDS//intron       24284625//22575960 chr7:150931296-150931297(+) m6A CDS//intron       24284625 chr7:150931303-150931304(+) m6A CDS//intron       24284625 chr7:150931329-150931330(+) m6A CDS//intron       24284625 chr7:150932149-150932150(+) m6A CDS       24284625//24981863 chr7:150932231-150932232(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:150932356-150932357(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:150932480-150932481(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr7:150932615-150932616(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:150933516-150933517(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr7:150933533-150933534(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr7:150933666-150933667(+) m6A CDS       24284625 chr7:150934472-150934473(+) m6A 3'UTR//CDS       24284625//24981863//22608085 chr7:150934574-150934575(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr7:150934672-150934673(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr7:150934787-150934788(+) m6A CDS       24284625//25456834//24981863//26404942//22575960//22608085 chr7:150935004-150935005(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr7:150935066-150935067(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr7:150935207-150935208(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:150935236-150935237(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:150935514-150935515(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:150935642-150935643(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr7:150935667-150935668(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr7:150935842-150935843(+) m6A 3'UTR       24284625//24981863//22608085 chr7:150935891-150935892(+) m6A 3'UTR       24284625//24981863//22608085 chr7:150935907-150935908(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3158-3p	Exosome Plasma     23663360 Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
	CHPF2	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3158-3p
Interactor2: CHPF2

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	CDS
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.