Detail Information

Basic Information:


  VIRBase ID:  

HHID00072348

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3074-3p:           BRCC3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3074-3p BRCC3
miRBase
Accession/Entrez ID		 MIMAT0015027 79184
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - BRCC36//C6.1A//CXorf53

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3074-3p
rs1239868123 chr9:95086025    G/A
rs1359892054 chr9:95086026    G/A
rs527734535 chr9:95086037    G/C
rs778461843 chr9:95086024    C/T
rs1462524363 chr9:95086042    T/TA
rs746151874 chr9:95086044    T/A
rs746151874 chr9:95086044    T/C
rs746151874 chr9:95086044    T/G
rs779347857 chr9:95086041    A/G
rs959770203 chr9:95086039    T/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BRCC3
chrX:154334050(+) A-I      intronic
chrX:154304525(+) A-I      intronic
chrX:154304488(+) A-I      intronic
chrX:154300976(+) A-I      intronic
chrX:154334154(+) A-I      intronic
chrX:154334148(+) A-I      intronic
chrX:154333607(+) A-I      intronic
chrX:154300971(+) A-I      intronic
chrX:154300937(+) A-I      intronic
chrX:154300862(+) A-I      intronic
chrX:154333611(+) A-I      intronic
chrX:154301043(+) A-I      intronic
chrX:154300994(+) A-I      intronic
chrX:154333637(+) A-I      intronic
chrX:154333660(+) A-I      intronic
chrX:154334073(+) A-I      intronic
chrX:154334106(+) A-I      intronic
chrX:154334110(+) A-I      intronic
chrX:154334163(+) A-I      intronic
chrX:154333602(+) A-I      intronic
chrX:154334131(+) A-I      intronic
chrX:154323712(+) A-I      intronic
chrX:154300930(+) A-I      intronic
chrX:154323705(+) A-I      intronic
chrX:154313202(+) A-I      intronic
chrX:154313098(+) A-I      intronic
chrX:154333560(+) A-I      intronic
chrX:154312845(+) A-I      intronic
chrX:154312837(+) A-I      intronic
chrX:154312767(+) A-I      intronic
chrX:154312755(+) A-I      intronic
chrX:154312699(+) A-I      intronic
chrX:154312661(+) A-I      intronic
chrX:154304589(+) A-I      intronic
chrX:154304585(+) A-I      intronic
chrX:154304430(+) A-I      intronic
chrX:154333596(+) A-I      intronic
chrX:154333598(+) A-I      intronic
chrX:154319664(+) A-I      intronic
chrX:154334103(+) A-I      intronic
chrX:154334053(+) A-I      intronic
chrX:154334184(+) A-I      intronic
chrX:154333582(+) A-I      intronic
chrX:154334074(+) A-I      intronic
chrX:154334113(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED BRCC3
chrX:154333476(+) A-I intron -    22327324

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BRCC3
chrX:154299760-154299761(+) m6A 5'UTR       24981863
chrX:154348406-154348407(+) m6A 3'UTR//CDS       24209618//24981863//22608085
chrX:154348433-154348434(+) m6A 3'UTR       24209618//24981863//27773535//22608085
chrX:154349556-154349557(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chrX:154349565-154349566(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chrX:154349587-154349588(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154349635-154349636(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154349656-154349657(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154349668-154349669(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154349680-154349681(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154349776-154349777(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chrX:154349801-154349802(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chrX:154349813-154349814(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chrX:154349855-154349856(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chrX:154349875-154349876(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chrX:154349945-154349946(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chrX:154349974-154349975(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chrX:154349993-154349994(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chrX:154350012-154350013(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chrX:154350066-154350067(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chrX:154350109-154350110(+) m6A 3'UTR       24209618//24981863//22608085
chrX:154350202-154350203(+) m6A 3'UTR       24981863//22608085
chrX:154350423-154350424(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chrX:154350437-154350438(+) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chrX:154350468-154350469(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chrX:154350475-154350476(+) Y 3'UTR       26075521
chrX:154350533-154350534(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154350565-154350566(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154350645-154350646(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chrX:154350730-154350731(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chrX:154350753-154350754(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chrX:154350760-154350761(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chrX:154350781-154350782(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chrX:154350804-154350805(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chrX:154350861-154350862(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154350868-154350869(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154350903-154350904(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154350907-154350908(+) m6A 3'UTR       27773535
chrX:154350947-154350948(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154350966-154350967(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154350997-154350998(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154351008-154351009(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chrX:154351086-154351087(+) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chrX:154351113-154351114(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chrX:154351181-154351182(+) m6A 3'UTR       24981863//22608085
chrX:154351276-154351277(+) m6A 3'UTR       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3074-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells     -
BRCC3
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3074-3p
Interactor2: BRCC3

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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