Detail Information

Basic Information:


  VIRBase ID:  

HHID00072320

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3150a-3p:           CLCF1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3150a-3p CLCF1
miRBase
Accession/Entrez ID		 MIMAT0015023 23529
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - BSF-3//BSF3//CISS2//CLC//NNT-1//NNT1//NR6

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3150a-3p
rs1005806635 chr8:95072962    C/CT
rs372692847 chr8:95072962    C/T

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CLCF1
chr11:67131945-67131946(-) m6A 3'UTR       24981863
chr11:67131964-67131965(-) m6A 3'UTR       24981863
chr11:67131969-67131970(-) m6A 3'UTR       25456834//24981863//27773535
chr11:67132000-67132001(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr11:67132005-67132006(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr11:67132014-67132015(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr11:67132050-67132051(-) m6A 3'UTR       24284625//24981863//27773535
chr11:67132131-67132132(-) m6A 3'UTR       27773535
chr11:67132482-67132483(-) m6A 3'UTR       27773535
chr11:67132514-67132515(-) m6A 3'UTR       24284625//24981863//27773535
chr11:67132572-67132573(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828
chr11:67132682-67132683(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr11:67132707-67132708(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr11:67132776-67132777(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr11:67132786-67132787(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr11:67132791-67132792(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr11:67132967-67132968(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr11:67132984-67132985(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr11:67133037-67133038(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr11:67133066-67133067(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr11:67133096-67133097(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960
chr11:67134935-67134936(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960
chr11:67134986-67134987(-) m6A CDS       24284625//24209618//24981863//27773535
chr11:67135015-67135016(-) m6A CDS       24284625//24209618//27773535
chr11:67135093-67135094(-) m6A 5'UTR//CDS       24209618
chr11:67141005-67141006(-) m6A CDS//intron       24209618//27773536
chr11:67141127-67141128(-) m6A 5'UTR//intron       24981863//27773535
chr11:67141141-67141142(-) m6A 5'UTR//intron       24981863//27773535
chr11:67141533-67141534(-) m6A 5'UTR       24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3150a-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
CLCF1
Chromatin K562 cells     -
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3150a-3p
Interactor2: CLCF1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...