Detail Information

Basic Information:


  VIRBase ID:  

HHID00072316

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3150a-3p:           COPG1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3150a-3p COPG1
miRBase
Accession/Entrez ID		 MIMAT0015023 22820
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - COPG

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3150a-3p
rs1005806635 chr8:95072962    C/CT
rs372692847 chr8:95072962    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR COPG1
chr3:128981701(+) A-I      intronic
chr3:128990495(+) A-I      intronic
chr3:128981742(+) A-I      intronic
chr3:128984842(+) A-I      intronic
chr3:128981251(+) A-I      intronic
chr3:128978184(+) A-I      intronic
chr3:128978143(+) A-I      intronic
chr3:128978142(+) A-I      intronic
chr3:128981706(+) A-I      intronic
chr3:128981703(+) A-I      intronic
chr3:128981278(+) A-I      intronic
chr3:128981686(+) A-I      intronic
chr3:128981241(+) A-I      intronic
chr3:128981307(+) A-I      intronic
chr3:128981358(+) A-I      intronic
chr3:128981515(+) A-I      intronic
chr3:128981637(+) A-I      intronic
chr3:128981647(+) A-I      intronic
chr3:128981170(+) A-I      intronic
chr3:128981213(+) A-I      intronic
chr3:128981237(+) A-I      intronic
chr3:128981675(+) A-I      intronic
chr3:128984889(+) A-I      intronic
chr3:128977440(+) A-I      intronic
chr3:128977466(+) A-I      intronic
chr3:128978219(+) A-I      intronic
chr3:128978224(+) A-I      intronic
chr3:128981024(+) A-I      intronic
chr3:128981370(+) A-I      intronic
chr3:128978077(+) A-I      intronic
chr3:128981439(+) A-I      intronic
chr3:128981748(+) A-I      intronic
chr3:128977375(+) A-I      intronic
chr3:128978151(+) A-I      intronic
chr3:128981303(+) A-I      intronic
chr3:128981810(+) A-I      intronic
chr3:128978153(+) A-I      intronic
chr3:128981281(+) A-I      intronic
chr3:128981607(+) A-I      intronic
chr3:128981235(+) A-I      intronic
chr3:128978051(+) A-I      intronic
chr3:128981811(+) A-I      intronic
chr3:128978148(+) A-I      intronic
chr3:128981816(+) A-I      intronic
chr3:128978050(+) A-I      intronic
chr3:128981752(+) A-I      intronic
chr3:128981023(+) A-I      intronic
chr3:128981807(+) A-I      intronic
chr3:128978157(+) A-I      intronic
chr3:128981445(+) A-I      intronic
chr3:128986405(+) A-I      intronic
chr3:128981225(+) A-I      intronic
chr3:128981697(+) A-I      intronic
chr3:128978032(+) A-I      intronic
chr3:128981462(+) A-I      intronic
chr3:128981704(+) A-I      intronic
chr3:128978249(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED COPG1
chr3:128981810(+) A-I intron -    22327324
chr3:128986488(+) A-I intron -    21960545
chr3:128988328(+) A-I intron -    21960545
chr3:128977320(+) A-G intron -    22484847
chr3:128978051(+) A-G intron -    22484847
chr3:128978077(+) A-G intron -    22484847
chr3:128978151(+) A-G intron -    22484847
chr3:128978157(+) A-G intron -    22484847
chr3:128981001(+) A-G intron -    22484847
chr3:128981165(+) A-G intron -    22484847
chr3:128981225(+) A-G intron -    22484847
chr3:128981235(+) A-G intron -    22484847
chr3:128981281(+) A-G intron -    22484847
chr3:128981303(+) A-G intron -    22484847
chr3:128981748(+) A-G intron -    22484847
chr3:128981810(+) A-G intron -    22484847
chr3:128981811(+) A-G intron -    22484847
chr3:128991962(+) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase COPG1
chr3:128968477-128968478(+) m6A 5'UTR//exon       24981863
chr3:128973574-128973575(+) Cm 3'UTR//CDS//exon       -
chr3:128990721-128990722(+) m6A CDS//exon//intron       22575960
chr3:128991099-128991100(+) m6A CDS//exon//intron       22575960
chr3:128991116-128991117(+) m6A CDS//exon//intron       22575960
chr3:128991212-128991213(+) m6A CDS//exon       22575960
chr3:128991246-128991247(+) m6A CDS//exon       22575960
chr3:128991691-128991692(+) m6A CDS//exon       27773535
chr3:128991714-128991715(+) m6A CDS//exon       24981863//27773535
chr3:128992928-128992929(+) m6A 3'UTR//intron       24981863
chr3:128996335-128996336(+) m6A 3'UTR//exon       24284625//27773535
chr3:128996345-128996346(+) m6A 3'UTR//exon       24284625//27773535
chr3:128996373-128996374(+) m6A 3'UTR//exon       24284625//24981863//27773535
chr3:128996428-128996429(+) m6A 3'UTR//exon       24284625//24981863//27773535
chr3:128996521-128996522(+) m6A 3'UTR//exon       24284625//24981863//27773535
chr3:128996539-128996540(+) m6A 3'UTR//exon       24284625//24981863//27773535
chr3:128996575-128996576(+) m6A 3'UTR//exon       24284625//24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3150a-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
COPG1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3150a-3p
Interactor2: COPG1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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