Detail Information

Basic Information:


  VIRBase ID:  

HHID00072314

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3150a-3p:           HYOU1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3150a-3p HYOU1
miRBase
Accession/Entrez ID		 MIMAT0015023 10525
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - GRP-170//Grp170//HSP12A//IMD59//ORP-150//ORP150

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3150a-3p
rs1005806635 chr8:95072962    C/CT
rs372692847 chr8:95072962    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HYOU1
chr11:118916817(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HYOU1
chr11:118915051-118915052(-) m6A 3'UTR       27773535
chr11:118915118-118915119(-) m6A 3'UTR       27773535
chr11:118915128-118915129(-) m6A 3'UTR       27773535
chr11:118916310-118916311(-) m6A CDS//intron       24981863//27773535//27371828
chr11:118916337-118916338(-) m6A CDS//intron       24981863//27773535//27371828
chr11:118916349-118916350(-) m6A CDS//intron       24981863//27773535//27371828
chr11:118916358-118916359(-) m6A CDS//intron       24981863//27773535//27371828
chr11:118916527-118916528(-) m6A CDS//intron       24981863//27773535//27371828
chr11:118917131-118917132(-) m6A CDS//intron       24981863//27773535//27371828
chr11:118917147-118917148(-) m6A CDS//intron       24981863//27773535//27371828
chr11:118917173-118917174(-) m6A CDS//intron       24981863//27773535//27371828
chr11:118917339-118917340(-) m6A CDS//intron       24981863//26404942//27773535//27371828//22575960
chr11:118917350-118917351(-) m6A CDS//intron       24981863//26404942//27773535//27371828//22575960
chr11:118917413-118917414(-) m6A CDS//intron       24981863//27773535//22575960
chr11:118917440-118917441(-) m6A CDS//intron       27773535//22575960
chr11:118918503-118918504(-) m6A CDS//exon//intron       27773535//27773536
chr11:118918740-118918741(-) Y CDS//exon       26075521
chr11:118919080-118919081(-) m6A 3'UTR//CDS//exon//intron       27773535//27773536//22575960
chr11:118919192-118919193(-) m6A 3'UTR//CDS//exon//intron       27773535//27773536//22575960
chr11:118919203-118919204(-) Y 3'UTR//CDS//exon       26075521
chr11:118919251-118919252(-) m6A 3'UTR//CDS//exon//intron       24209618//27773535//27371828//27773536//22575960
chr11:118919266-118919267(-) m6A 3'UTR//CDS//exon//intron       24209618//27773535//27371828//27773536//22575960
chr11:118919470-118919471(-) m6A 3'UTR//CDS//exon//intron       24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr11:118919534-118919535(-) m1A 3'UTR//CDS//exon//intron       26863410//26863196
chr11:118919595-118919596(-) m6A 3'UTR//CDS//intron       24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr11:118919745-118919746(-) m6A 3'UTR//CDS//intron       24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr11:118919801-118919802(-) m6A 3'UTR//CDS//intron       24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr11:118920001-118920002(-) m6A 3'UTR//intron       24209618//27773535//27371828//27773536//22575960
chr11:118920517-118920518(-) m6A 3'UTR//CDS//intron       24209618//27773535//22575960
chr11:118920530-118920531(-) m6A 3'UTR//CDS//intron       24209618//27773535//22575960
chr11:118921750-118921751(-) m6A 3'UTR//CDS//intron       24209618//27773535//22575960
chr11:118922645-118922646(-) m6A 3'UTR//CDS//intron       24284625//27773535//22575960
chr11:118923067-118923068(-) m6A 3'UTR//CDS//intron       24284625//27773535//22575960
chr11:118923115-118923116(-) m6A 3'UTR//CDS//exon//intron       27773535//22575960
chr11:118923169-118923170(-) m6A exon//intron       27773535//22575960
chr11:118923223-118923224(-) m6A exon//intron       27773535
chr11:118923383-118923384(-) m6A 3'UTR//CDS//exon//intron       27773535//27371828
chr11:118923430-118923431(-) m6A 3'UTR//CDS//exon//intron       24981863//27773535//27371828//22575960
chr11:118924878-118924879(-) m6A 3'UTR//CDS//exon//intron       22575960
chr11:118925977-118925978(-) Y 3'UTR//CDS//exon       26075521
chr11:118926220-118926221(-) m6A 3'UTR//CDS//exon       27773535
chr11:118926266-118926267(-) m6A CDS//exon       27773535
chr11:118926375-118926376(-) m6A exon//intron       27773535
chr11:118926493-118926494(-) m6A CDS//exon//intron       22575960
chr11:118926530-118926531(-) m6A CDS//exon//intron       22575960
chr11:118926798-118926799(-) m6A CDS//exon//intron       24284625//22575960
chr11:118926864-118926865(-) m6A CDS//exon//intron       24284625//22575960
chr11:118927096-118927097(-) m6A 5'UTR//intron       24284625//27371828
chr11:118927681-118927682(-) m6A 5'UTR//intron       24209618//24981863
chr11:118927835-118927836(-) m6A 5'UTR//exon//intron       24209618//25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3150a-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
HYOU1
Chromatin K562 cells     -
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3150a-3p
Interactor2: HYOU1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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