Basic Information:

  VIRBase ID:  

HHID00072310

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3150a-3p:  MIMAT0015023          CD83:  NM_001040280     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3150a-3p	CD83
miRBase Accession/Entrez ID	MIMAT0015023	9308
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	BL11//HB15

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3150a-3p	rs1005806635 chr8:95072962    C/CT rs372692847 chr8:95072962    C/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CD83	chr6:14121505(+) A-I      intronic chr6:14121558(+) A-I      intronic chr6:14121550(+) A-I      intronic chr6:14121535(+) A-I      intronic chr6:14121504(+) A-I      intronic chr6:14121606(+) A-I      intronic chr6:14121637(+) A-I      intronic chr6:14130920(+) A-I      intronic chr6:14121801(+) A-I      intronic chr6:14121643(+) A-I      intronic chr6:14121669(+) A-I      intronic chr6:14130840(+) A-I      intronic chr6:14121466(+) A-I      intronic chr6:14121420(+) A-I      intronic chr6:14121540(+) A-I      intronic chr6:14121785(+) A-I      intronic chr6:14127238(+) A-I      intronic chr6:14121543(+) A-I      intronic chr6:14121756(+) A-I      intronic chr6:14121445(+) A-I      intronic chr6:14121422(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CD83	chr6:14121591(+) A-I intron -    15258596   //21960545   //22327324 chr6:14121630(+) A-I intron -    15258596 chr6:14121642(+) A-I intron -    15258596 chr6:14121670(+) A-I intron -    15258596   //22327324 chr6:14121445(+) A-G intron -    22484847 chr6:14121543(+) A-G intron -    22484847 chr6:14121591(+) A-G intron -    22484847 chr6:14121637(+) A-G intron -    22484847 chr6:14121669(+) A-G intron -    22484847 chr6:14121670(+) A-G intron -    22484847 chr6:14123330(+) T-G intron -    22484847 chr6:14123331(+) G-T intron -    22484847 chr6:14127238(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CD83	chr6:14118237-14118238(+) m6A 5'UTR//CDS       24284625 chr6:14131780-14131781(+) m6A CDS       24284625 chr6:14131793-14131794(+) m6A CDS       24284625 chr6:14131806-14131807(+) m6A CDS       24284625 chr6:14131883-14131884(+) m6A CDS       24284625 chr6:14131906-14131907(+) m6A CDS       24284625 chr6:14131928-14131929(+) m6A CDS       24284625 chr6:14131946-14131947(+) m6A CDS       24284625 chr6:14133905-14133906(+) m6A CDS       24284625 chr6:14135452-14135453(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr6:14135457-14135458(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr6:14135595-14135596(+) m6A 3'UTR       24284625//24209618//22608085 chr6:14135643-14135644(+) m6A 3'UTR       24284625//24209618//26404942//22608085 chr6:14135734-14135735(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr6:14135823-14135824(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr6:14135833-14135834(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr6:14135860-14135861(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr6:14135942-14135943(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr6:14136035-14136036(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr6:14136070-14136071(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr6:14136193-14136194(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr6:14136210-14136211(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr6:14136379-14136380(+) m6A 3'UTR       24284625 chr6:14136550-14136551(+) m6A 3'UTR       24284625 chr6:14136607-14136608(+) Am 3'UTR       - chr6:14136671-14136672(+) m6A 3'UTR       24284625//25456834//24981863//26404942//22608085 chr6:14136697-14136698(+) m6A 3'UTR       24284625//25456834//24981863//26404942//22608085 chr6:14136751-14136752(+) m6A 3'UTR       24284625//25456834//24981863//26404942//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3150a-3p	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
	CD83	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3150a-3p
Interactor2: CD83

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	CDS
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.