Basic Information:

  VIRBase ID:  

HHID00072309

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3150a-3p:  MIMAT0015023          BUB3:  NM_004725     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3150a-3p	BUB3
miRBase Accession/Entrez ID	MIMAT0015023	9184
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	BUB3L//hBUB3

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3150a-3p	rs1005806635 chr8:95072962    C/CT rs372692847 chr8:95072962    C/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	BUB3	chr10:124916340(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	BUB3	chr10:124913838-124913839(+) m6A 5'UTR       24981863 chr10:124914401-124914402(+) m6A 5'UTR//intron       24981863//22575960 chr10:124914411-124914412(+) m6A 5'UTR//intron       22575960 chr10:124914461-124914462(+) m6A CDS       22575960 chr10:124914539-124914540(+) m6A CDS       22575960 chr10:124917375-124917376(+) m6A CDS       22575960 chr10:124919947-124919948(+) m6A CDS//intron       22575960 chr10:124919964-124919965(+) m6A CDS//intron       22575960 chr10:124919992-124919993(+) m6A CDS//intron       22575960 chr10:124920001-124920002(+) m6A CDS//intron       22575960 chr10:124920048-124920049(+) m6A CDS//intron       22575960 chr10:124920073-124920074(+) m6A CDS//intron       22575960 chr10:124921800-124921801(+) m6A CDS//exon//intron       22575960 chr10:124922189-124922190(+) Cm CDS//exon//intron       - chr10:124922237-124922238(+) m6A CDS//exon//intron       24284625//27773535 chr10:124922287-124922288(+) m6A CDS//exon//intron       24284625//27773535 chr10:124922333-124922334(+) m6A CDS//exon//intron       24284625 chr10:124922338-124922339(+) m6A CDS//exon//intron       24284625 chr10:124924692-124924693(+) m6A 3'UTR       27773535 chr10:124924805-124924806(+) m6A 3'UTR       27773535 chr10:124924837-124924838(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3150a-3p	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
	BUB3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3150a-3p
Interactor2: BUB3

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.