Detail Information

Basic Information:


  VIRBase ID:  

HHID00072308

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3150a-3p:           MPZL1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3150a-3p MPZL1
miRBase
Accession/Entrez ID		 MIMAT0015023 9019
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - MPZL1b//PZR//PZR1b//PZRa//PZRb

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3150a-3p
rs1005806635 chr8:95072962    C/CT
rs372692847 chr8:95072962    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MPZL1
chr1:167702922(+) A-I      intronic
chr1:167710371(+) A-I      intronic
chr1:167702744(+) A-I      intronic
chr1:167710303(+) A-I      intronic
chr1:167698293(+) A-I      intronic
chr1:167698419(+) A-I      intronic
chr1:167700462(+) A-I      intronic
chr1:167711490(+) A-I      intronic
chr1:167727284(+) A-I      intronic
chr1:167707227(+) A-I      intronic
chr1:167708291(+) A-I      intronic
chr1:167711163(+) A-I      intronic
chr1:167747447(+) A-I      intronic
chr1:167701818(+) A-I      intronic
chr1:167700501(+) A-I      intronic
chr1:167711143(+) A-I      intronic
chr1:167711020(+) A-I      intronic
chr1:167710680(+) A-I      intronic
chr1:167710627(+) A-I      intronic
chr1:167710511(+) A-I      intronic
chr1:167700813(+) A-I      intronic
chr1:167747438(+) A-I      intronic
chr1:167710592(+) A-I      intronic
chr1:167710494(+) A-I      intronic
chr1:167707429(+) A-I      intronic
chr1:167710493(+) A-I      intronic
chr1:167701897(+) A-I      intronic
chr1:167700937(+) A-I      intronic
chr1:167732530(+) A-I      intronic
chr1:167727248(+) A-I      intronic
chr1:167711250(+) A-I      intronic
chr1:167701656(+) A-I      intronic
chr1:167711110(+) A-I      intronic
chr1:167701902(+) A-I      intronic
chr1:167700949(+) A-I      intronic
chr1:167708296(+) A-I      intronic
chr1:167702780(+) A-I      intronic
chr1:167702079(+) A-I      intronic
chr1:167701934(+) A-I      intronic
chr1:167729717(+) A-I      intronic
chr1:167700754(+) A-I      intronic
chr1:167732567(+) A-I      intronic
chr1:167711173(+) A-I      intronic
chr1:167700748(+) A-I      intronic
chr1:167710743(+) A-I      intronic
chr1:167700857(+) A-I      intronic
chr1:167747571(+) A-I      intronic
chr1:167703068(+) A-I      intronic
chr1:167729581(+) A-I      intronic
chr1:167729576(+) A-I      intronic
chr1:167710354(+) A-I      intronic
chr1:167711302(+) A-I      intronic
chr1:167703037(+) A-I      intronic
chr1:167748702(+) A-I      intronic
chr1:167698360(+) A-I      intronic
chr1:167708385(+) A-I      intronic
chr1:167710312(+) A-I      intronic
chr1:167710759(+) A-I      intronic
chr1:167711409(+) A-I      intronic
chr1:167700526(+) A-I      intronic
chr1:167701815(+) A-I      intronic
chr1:167698427(+) A-I      intronic
chr1:167700882(+) A-I      intronic
chr1:167743525(+) A-I      intronic
chr1:167708308(+) A-I      intronic
chr1:167700510(+) A-I      intronic
chr1:167698253(+) A-I      intronic
chr1:167716588(+) A-I      intronic
chr1:167700523(+) A-I      intronic
chr1:167710333(+) A-I      intronic
chr1:167710357(+) A-I      intronic
chr1:167708432(+) A-I      intronic
chr1:167697332(+) A-I      intronic
chr1:167729646(+) A-I      intronic
chr1:167748374(+) A-I      intronic
chr1:167700860(+) A-I      intronic
chr1:167711105(+) A-I      intronic
chr1:167710776(+) A-I      intronic
chr1:167711149(+) A-I      intronic
chr1:167707368(+) A-I      intronic
chr1:167711301(+) A-I      intronic
chr1:167748196(+) A-I      intronic
chr1:167729714(+) A-I      intronic
chr1:167713743(+) A-I      intronic
chr1:167713842(+) A-I      intronic
chr1:167729544(+) A-I      intronic
chr1:167700553(+) A-I      intronic
chr1:167743546(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MPZL1
chr1:167700510(+) A-G intron -    22484847
chr1:167700857(+) A-G intron -    22484847
chr1:167700860(+) A-G intron -    22484847
chr1:167700882(+) A-G intron -    22484847
chr1:167701902(+) A-G intron -    22484847
chr1:167701934(+) A-G intron -    22484847
chr1:167702780(+) A-G intron -    22484847
chr1:167707368(+) A-G intron -    22484847
chr1:167708296(+) A-G intron -    22484847
chr1:167710312(+) A-G intron -    22484847
chr1:167710354(+) A-G intron -    22484847
chr1:167710743(+) A-G intron -    22484847
chr1:167710759(+) A-G intron -    22484847
chr1:167710776(+) A-G intron -    22484847
chr1:167711173(+) A-G intron -    22484847
chr1:167711302(+) A-G intron -    22484847
chr1:167732567(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MPZL1
chr1:167690871-167690872(+) m6A exon       -
chr1:167690914-167690915(+) m6A exon       25456834
chr1:167690931-167690932(+) m6A exon       25456834
chr1:167690943-167690944(+) m6A exon       25456834
chr1:167690951-167690952(+) m6A exon       25456834
chr1:167690956-167690957(+) m6A exon       25456834
chr1:167691129-167691130(+) m6A exon       25456834
chr1:167691184-167691185(+) m6A exon       25456834//24981863
chr1:167691243-167691244(+) m6A 5'UTR//exon       24209618//25456834//24981863//22608085
chr1:167691337-167691338(+) m6A 5'UTR//exon       24209618//25456834//24981863//27371828//22608085
chr1:167691431-167691432(+) m6A CDS//exon       24209618
chr1:167756485-167756486(+) m6A exon//intron       24284625
chr1:167757081-167757082(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:167757094-167757095(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:167757171-167757172(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167757189-167757190(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167757194-167757195(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167757199-167757200(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167757204-167757205(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167757250-167757251(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167757262-167757263(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167759104-167759105(+) m6A 3'UTR       24981863
chr1:167759128-167759129(+) m6A 3'UTR       24981863
chr1:167759204-167759205(+) m6A 3'UTR       24981863//26404942
chr1:167759233-167759234(+) m6A 3'UTR       24981863//26404942
chr1:167759553-167759554(+) m6A 3'UTR       24284625
chr1:167759562-167759563(+) m6A 3'UTR       24284625
chr1:167759661-167759662(+) m6A 3'UTR       24284625//25456834//22575960
chr1:167759714-167759715(+) m6A 3'UTR       24284625//25456834//22575960
chr1:167759808-167759809(+) m6A 3'UTR       24284625//26404942
chr1:167759861-167759862(+) m6A 3'UTR       24284625//26404942

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3150a-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
MPZL1
Chromatin K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3150a-3p
Interactor2: MPZL1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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