Basic Information:

  VIRBase ID:  

HHID00072307

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3150a-3p:  MIMAT0015023          ATRN:  NM_139321     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3150a-3p	ATRN
miRBase Accession/Entrez ID	MIMAT0015023	8455
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	DPPT-L//MGCA

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3150a-3p	rs1005806635 chr8:95072962    C/CT rs372692847 chr8:95072962    C/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ATRN	chr20:3546058(+) A-I      NonSyn:His->Arg chr20:3566432(+) A-I      intronic chr20:3590309(+) A-I      intronic chr20:3588222(+) A-I      intronic chr20:3542436(+) A-I      intronic chr20:3590298(+) A-I      intronic chr20:3590297(+) A-I      intronic chr20:3583410(+) A-I      intronic chr20:3588246(+) A-I      intronic chr20:3588241(+) A-I      intronic chr20:3583434(+) A-I      intronic chr20:3582766(+) A-I      intronic chr20:3583421(+) A-I      intronic chr20:3583409(+) A-I      intronic chr20:3582801(+) A-I      intronic chr20:3582751(+) A-I      intronic chr20:3582742(+) A-I      intronic chr20:3588234(+) A-I      intronic chr20:3462128(+) A-I      intronic chr20:3459812(+) A-I      intronic chr20:3459661(+) A-I      intronic chr20:3459656(+) A-I      intronic chr20:3459616(+) A-I      intronic chr20:3459597(+) A-I      intronic chr20:3459596(+) A-I      intronic chr20:3456645(+) A-I      intronic chr20:3456633(+) A-I      intronic chr20:3456627(+) A-I      intronic chr20:3456523(+) A-I      intronic chr20:3455496(+) A-I      intronic chr20:3455426(+) A-I      intronic chr20:3455233(+) A-I      intronic chr20:3455176(+) A-I      intronic chr20:3455094(+) A-I      intronic chr20:3455425(+) A-I      intronic chr20:3596348(+) A-I      intronic chr20:3596339(+) A-I      intronic chr20:3596267(+) A-I      intronic chr20:3596258(+) A-I      intronic chr20:3596256(+) A-I      intronic chr20:3596246(+) A-I      intronic chr20:3596234(+) A-I      intronic chr20:3595890(+) A-I      intronic chr20:3595889(+) A-I      intronic chr20:3584266(+) A-I      intronic chr20:3583522(+) A-I      intronic chr20:3583516(+) A-I      intronic chr20:3583450(+) A-I      intronic chr20:3583446(+) A-I      intronic chr20:3583382(+) A-I      intronic chr20:3582781(+) A-I      intronic chr20:3582767(+) A-I      intronic chr20:3555087(+) A-I      intronic chr20:3555067(+) A-I      intronic chr20:3554977(+) A-I      intronic chr20:3554909(+) A-I      intronic chr20:3554594(+) A-I      intronic chr20:3542620(+) A-I      intronic chr20:3542425(+) A-I      intronic chr20:3541927(+) A-I      intronic chr20:3541863(+) A-I      intronic chr20:3541823(+) A-I      intronic chr20:3541805(+) A-I      intronic chr20:3530868(+) A-I      intronic chr20:3530832(+) A-I      intronic chr20:3530828(+) A-I      intronic chr20:3530725(+) A-I      intronic chr20:3516512(+) A-I      intronic chr20:3516407(+) A-I      intronic chr20:3512640(+) A-I      intronic chr20:3509586(+) A-I      intronic chr20:3509585(+) A-I      intronic chr20:3509572(+) A-I      intronic chr20:3509540(+) A-I      intronic chr20:3509539(+) A-I      intronic chr20:3508908(+) A-I      intronic chr20:3508895(+) A-I      intronic chr20:3501379(+) A-I      intronic chr20:3501324(+) A-I      intronic chr20:3501216(+) A-I      intronic chr20:3490385(+) A-I      intronic chr20:3490238(+) A-I      intronic chr20:3490224(+) A-I      intronic chr20:3490167(+) A-I      intronic chr20:3488746(+) A-I      intronic chr20:3488449(+) A-I      intronic chr20:3488432(+) A-I      intronic chr20:3488425(+) A-I      intronic chr20:3488370(+) A-I      intronic chr20:3487937(+) A-I      intronic chr20:3487191(+) A-I      intronic chr20:3487124(+) A-I      intronic chr20:3487110(+) A-I      intronic chr20:3487070(+) A-I      intronic chr20:3474189(+) A-I      intronic chr20:3474141(+) A-I      intronic chr20:3468077(+) A-I      intronic chr20:3468063(+) A-I      intronic chr20:3468060(+) A-I      intronic chr20:3468054(+) A-I      intronic chr20:3468045(+) A-I      intronic chr20:3468019(+) A-I      intronic chr20:3468009(+) A-I      intronic chr20:3464133(+) A-I      intronic chr20:3464033(+) A-I      intronic chr20:3623647(+) A-I      intronic chr20:3596063(+) A-I      intronic chr20:3606664(+) A-I      intronic chr20:3542444(+) A-I      intronic chr20:3515390(+) A-I      intronic chr20:3464175(+) A-I      intronic chr20:3512697(+) A-I      intronic chr20:3591154(+) A-I      intronic chr20:3495382(+) A-I      intronic chr20:3455100(+) A-I      intronic chr20:3595955(+) A-I      intronic chr20:3525868(+) A-I      intronic chr20:3555082(+) A-I      intronic chr20:3542398(+) A-I      intronic chr20:3488624(+) A-I      intronic chr20:3542608(+) A-I      intronic chr20:3455092(+) A-I      intronic chr20:3584157(+) A-I      intronic chr20:3464628(+) A-I      intronic chr20:3584369(+) A-I      intronic chr20:3553309(+) A-I      intronic chr20:3582821(+) A-I      intronic chr20:3464093(+) A-I      intronic chr20:3595894(+) A-I      intronic chr20:3542655(+) A-I      intronic chr20:3595972(+) A-I      intronic chr20:3595929(+) A-I      intronic chr20:3467184(+) A-I      intronic chr20:3624044(+) A-I      intronic chr20:3464178(+) A-I      intronic chr20:3467992(+) A-I      intronic chr20:3596342(+) A-I      intronic chr20:3488814(+) A-I      intronic chr20:3467065(+) A-I      intronic chr20:3455513(+) A-I      intronic chr20:3464713(+) A-I      intronic chr20:3596033(+) A-I      intronic chr20:3466549(+) A-I      intronic chr20:3596386(+) A-I      intronic chr20:3511188(+) A-I      intronic chr20:3542475(+) A-I      intronic chr20:3474007(+) A-I      intronic chr20:3596369(+) A-I      intronic chr20:3455461(+) A-I      intronic chr20:3596041(+) A-I      intronic chr20:3488763(+) A-I      intronic chr20:3592328(+) A-I      intronic chr20:3607538(+) A-I      intronic chr20:3515383(+) A-I      intronic chr20:3473870(+) A-I      intronic chr20:3515515(+) A-I      intronic chr20:3488618(+) A-I      intronic chr20:3515382(+) A-I      intronic chr20:3582791(+) A-I      intronic chr20:3501303(+) A-I      intronic chr20:3501165(+) A-I      intronic chr20:3488740(+) A-I      intronic chr20:3611871(+) A-I      intronic chr20:3456530(+) A-I      intronic chr20:3501168(+) A-I      intronic chr20:3555122(+) A-I      intronic chr20:3591444(+) A-I      intronic chr20:3490280(+) A-I      intronic chr20:3464841(+) A-I      intronic chr20:3606659(+) A-I      intronic chr20:3611799(+) A-I      intronic chr20:3596332(+) A-I      intronic chr20:3595820(+) A-I      intronic chr20:3583560(+) A-I      intronic chr20:3487196(+) A-I      intronic chr20:3464851(+) A-I      intronic chr20:3622140(+) A-I      intronic chr20:3508829(+) A-I      intronic chr20:3464680(+) A-I      intronic chr20:3555147(+) A-I      intronic chr20:3596400(+) A-I      intronic chr20:3487183(+) A-I      intronic chr20:3487975(+) A-I      intronic chr20:3488741(+) A-I      intronic chr20:3592198(+) A-I      intronic chr20:3620135(+) A-I      intronic chr20:3502568(+) A-I      intronic chr20:3541794(+) A-I      intronic chr20:3596368(+) A-I      intronic chr20:3596383(+) A-I      intronic chr20:3487016(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ATRN	chr20:3470923(+) A-I intron -    22327324 chr20:3470926(+) A-I intron -    22327324 chr20:3470959(+) A-I intron -    22327324 chr20:3470962(+) A-I intron -    22327324 chr20:3471212(+) A-I intron -    22327324 chr20:3471400(+) A-I intron -    22327324 chr20:3471452(+) A-I intron -    22327324 chr20:3566488(+) A-I intron -    21960545 chr20:3567640(+) A-I intron -    21960545 chr20:3588124(+) A-I intron -    21960545 chr20:3588314(+) A-I intron -    21960545 chr20:3595647(+) A-I intron -    21960545 chr20:3566512(+) A-G intron -    22484847 chr20:3566527(+) A-G intron -    22484847 chr20:3566528(+) G-A intron -    22484847 chr20:3566534(+) A-G intron -    22484847 chr20:3590324(+) A-G intron -    22484847 chr20:3464625(+) A-G intron -    22484847 chr20:3582738(+) A-G intron -    22484847 chr20:3582791(+) A-G intron -    22484847 chr20:3596369(+) A-G intron -    22484847 chr20:3607533(+) A-G intron -    22484847 chr20:3607538(+) A-G intron -    22484847 chr20:3607563(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ATRN	chr20:3451848-3451849(+) m6A CDS       24209618//24981863 chr20:3596480-3596481(+) m6A CDS//intron       - chr20:3596485-3596486(+) m6A CDS//intron       - chr20:3596502-3596503(+) m6A 3'UTR//intron       - chr20:3596516-3596517(+) m6A 3'UTR//intron       - chr20:3627396-3627397(+) m6A CDS       24284625//25456834//24981863//22608085 chr20:3627450-3627451(+) m6A CDS       24284625//25456834//24981863//22608085 chr20:3627482-3627483(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr20:3627508-3627509(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:3627600-3627601(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:3627607-3627608(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:3627780-3627781(+) m6A 3'UTR       25456834//24981863//26404942//27773535//22608085 chr20:3627812-3627813(+) m6A 3'UTR       25456834//24981863//26404942//27773535//22608085 chr20:3627824-3627825(+) m6A 3'UTR       25456834//24981863//26404942//27773535//22608085 chr20:3627845-3627846(+) m6A 3'UTR       25456834//24981863//26404942//27773535//22608085 chr20:3627871-3627872(+) m6A 3'UTR       25456834//24981863//22608085 chr20:3627895-3627896(+) m6A 3'UTR       25456834//24981863//22608085 chr20:3627911-3627912(+) m6A 3'UTR       24981863//22608085 chr20:3628187-3628188(+) m6A 3'UTR       24981863 chr20:3628263-3628264(+) m6A 3'UTR       24981863 chr20:3628291-3628292(+) m6A 3'UTR       24981863 chr20:3628447-3628448(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:3628493-3628494(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:3628527-3628528(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:3628599-3628600(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr20:3628652-3628653(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3628697-3628698(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3628726-3628727(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3628746-3628747(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr20:3628792-3628793(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr20:3628848-3628849(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3628929-3628930(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085 chr20:3628969-3628970(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3629086-3629087(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3629120-3629121(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3629128-3629129(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3629178-3629179(+) m6A 3'UTR       24284625//25456834//24981863//26404942//22608085 chr20:3629292-3629293(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr20:3629300-3629301(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr20:3629319-3629320(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr20:3629335-3629336(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr20:3629377-3629378(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr20:3629396-3629397(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr20:3629434-3629435(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr20:3629461-3629462(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr20:3629560-3629561(+) m6A 3'UTR       24284625//24981863 chr20:3630191-3630192(+) m6A 3'UTR       26404942 chr20:3630196-3630197(+) m6A 3'UTR       26404942 chr20:3630585-3630586(+) m6A 3'UTR       - chr20:3630703-3630704(+) m6A 3'UTR       25456834//24981863 chr20:3630710-3630711(+) m6A 3'UTR       25456834//24981863 chr20:3630735-3630736(+) m6A 3'UTR       25456834//24981863 chr20:3630765-3630766(+) m6A 3'UTR       25456834//24981863 chr20:3630772-3630773(+) m6A 3'UTR       25456834//24981863 chr20:3630975-3630976(+) m6A 3'UTR       26404942 chr20:3631037-3631038(+) m6A 3'UTR       26404942 chr20:3631591-3631592(+) m6A 3'UTR       27773535 chr20:3631646-3631647(+) m6A 3'UTR       27773535 chr20:3631654-3631655(+) m6A 3'UTR       27773535 chr20:3631679-3631680(+) m6A 3'UTR       27773535 chr20:3631694-3631695(+) m6A 3'UTR       27773535 chr20:3631706-3631707(+) m6A 3'UTR       27773535 chr20:3631730-3631731(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3150a-3p	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
	ATRN	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3150a-3p
Interactor2: ATRN

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.