Detail Information

Basic Information:


  VIRBase ID:  

HHID00072304

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3150a-3p:           YES1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3150a-3p YES1
miRBase
Accession/Entrez ID		 MIMAT0015023 7525
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - c-yes//HsT441//P61-YES//Yes

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3150a-3p
rs1005806635 chr8:95072962    C/CT
rs372692847 chr8:95072962    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR YES1
chr18:787239(-) A-I      intronic
chr18:787245(-) A-I      intronic
chr18:776291(-) A-I      intronic
chr18:728708(-) A-I      intronic
chr18:730461(-) A-I      intronic
chr18:730482(-) A-I      intronic
chr18:738568(-) A-I      intronic
chr18:754526(-) A-I      intronic
chr18:763591(-) A-I      intronic
chr18:763652(-) A-I      intronic
chr18:775676(-) A-I      intronic
chr18:775715(-) A-I      intronic
chr18:809386(-) A-I      intronic
chr18:755429(-) A-I      intronic
chr18:755435(-) A-I      intronic
chr18:776284(-) A-I      intronic
chr18:776286(-) A-I      intronic
chr18:776292(-) A-I      intronic
chr18:776332(-) A-I      intronic
chr18:776343(-) A-I      intronic
chr18:787184(-) A-I      intronic
chr18:752186(-) A-I      intronic
chr18:757690(-) A-I      intronic
chr18:757739(-) A-I      intronic
chr18:757778(-) A-I      intronic
chr18:757808(-) A-I      intronic
chr18:763565(-) A-I      intronic
chr18:763602(-) A-I      intronic
chr18:755381(-) A-I      intronic
chr18:764936(-) A-I      intronic
chr18:765008(-) A-I      intronic
chr18:767283(-) A-I      intronic
chr18:767289(-) A-I      intronic
chr18:767291(-) A-I      intronic
chr18:775711(-) A-I      intronic
chr18:776297(-) A-I      intronic
chr18:752725(-) A-I      intronic
chr18:752193(-) A-I      intronic
chr18:755413(-) A-I      intronic
chr18:787648(-) A-I      intronic
chr18:802833(-) A-I      intronic
chr18:787709(-) A-I      intronic
chr18:792186(-) A-I      intronic
chr18:792193(-) A-I      intronic
chr18:792219(-) A-I      intronic
chr18:792463(-) A-I      intronic
chr18:792789(-) A-I      intronic
chr18:793312(-) A-I      intronic
chr18:752228(-) A-I      intronic
chr18:752272(-) A-I      intronic
chr18:752305(-) A-I      intronic
chr18:763903(-) A-I      intronic
chr18:752327(-) A-I      intronic
chr18:809397(-) A-I      intronic
chr18:809439(-) A-I      intronic
chr18:752347(-) A-I      intronic
chr18:752356(-) A-I      intronic
chr18:792790(-) A-I      intronic
chr18:725705(-) A-I      intronic
chr18:725696(-) A-I      intronic
chr18:809339(-) A-I      intronic
chr18:809468(-) A-I      intronic
chr18:755387(-) A-I      intronic
chr18:754463(-) A-I      intronic
chr18:753674(-) A-I      intronic
chr18:753668(-) A-I      intronic
chr18:780219(-) A-I      intronic
chr18:752842(-) A-I      intronic
chr18:752834(-) A-I      intronic
chr18:752794(-) A-I      intronic
chr18:782869(-) A-I      intronic
chr18:755409(-) A-I      intronic
chr18:783772(-) A-I      intronic
chr18:787278(-) A-I      intronic
chr18:787327(-) A-I      intronic
chr18:787593(-) A-I      intronic
chr18:744522(-) A-I      intronic
chr18:744492(-) A-I      intronic
chr18:741742(-) A-I      intronic
chr18:741413(-) A-I      intronic
chr18:741359(-) A-I      intronic
chr18:740966(-) A-I      intronic
chr18:739595(-) A-I      intronic
chr18:739503(-) A-I      intronic
chr18:738956(-) A-I      intronic
chr18:738948(-) A-I      intronic
chr18:738935(-) A-I      intronic
chr18:738432(-) A-I      intronic
chr18:737923(-) A-I      intronic
chr18:737914(-) A-I      intronic
chr18:737895(-) A-I      intronic
chr18:737817(-) A-I      intronic
chr18:737812(-) A-I      intronic
chr18:737345(-) A-I      intronic
chr18:737255(-) A-I      intronic
chr18:737236(-) A-I      intronic
chr18:737196(-) A-I      intronic
chr18:730437(-) A-I      intronic
chr18:730410(-) A-I      intronic
chr18:730383(-) A-I      intronic
chr18:729854(-) A-I      intronic
chr18:729764(-) A-I      intronic
chr18:729759(-) A-I      intronic
chr18:729738(-) A-I      intronic
chr18:729723(-) A-I      intronic
chr18:729371(-) A-I      intronic
chr18:729358(-) A-I      intronic
chr18:729353(-) A-I      intronic
chr18:729339(-) A-I      intronic
chr18:728813(-) A-I      intronic
chr18:728797(-) A-I      intronic
chr18:728744(-) A-I      intronic
chr18:728725(-) A-I      intronic
chr18:728705(-) A-I      intronic
chr18:728694(-) A-I      intronic
chr18:728654(-) A-I      intronic
chr18:728612(-) A-I      intronic
chr18:728599(-) A-I      intronic
chr18:728594(-) A-I      intronic
chr18:728565(-) A-I      intronic
chr18:725762(-) A-I      intronic
chr18:723090(-) A-I      3'UTR
chr18:723016(-) A-I      3'UTR
chr18:723035(-) A-I      3'UTR
chr18:722925(-) A-I      3'UTR
chr18:722848(-) A-I      3'UTR
chr18:722970(-) A-I      3'UTR
chr18:722849(-) A-I      3'UTR
chr18:722944(-) A-I      3'UTR
chr18:793580(-) A-I      intronic
chr18:744550(-) A-I      intronic
chr18:763587(-) A-I      intronic
chr18:763512(-) A-I      intronic
chr18:787265(-) A-I      intronic
chr18:752289(-) A-I      intronic
chr18:752256(-) A-I      intronic
chr18:754462(-) A-I      intronic
chr18:743709(-) A-I      intronic
chr18:793492(-) A-I      intronic
chr18:789545(-) A-I      intronic
chr18:741379(-) A-I      intronic
chr18:728629(-) A-I      intronic
chr18:754635(-) A-I      intronic
chr18:793462(-) A-I      intronic
chr18:794826(-) A-I      intronic
chr18:783795(-) A-I      intronic
chr18:809561(-) A-I      intronic
chr18:728805(-) A-I      intronic
chr18:752780(-) A-I      intronic
chr18:725632(-) A-I      intronic
chr18:765602(-) A-I      intronic
chr18:738921(-) A-I      intronic
chr18:728258(-) A-I      intronic
chr18:783789(-) A-I      intronic
chr18:728244(-) A-I      intronic
chr18:725638(-) A-I      intronic
chr18:725625(-) A-I      intronic
chr18:788699(-) A-I      intronic
chr18:771714(-) A-I      intronic
chr18:737281(-) A-I      intronic
chr18:792719(-) A-I      intronic
chr18:728670(-) A-I      intronic
chr18:791129(-) A-I      intronic
chr18:790315(-) A-I      intronic
chr18:791087(-) A-I      intronic
chr18:728091(-) A-I      intronic
chr18:739377(-) A-I      intronic
chr18:792221(-) A-I      intronic
chr18:771816(-) A-I      intronic
chr18:771185(-) A-I      intronic
chr18:728690(-) A-I      intronic
chr18:783798(-) A-I      intronic
chr18:729379(-) A-I      intronic
chr18:730460(-) A-I      intronic
chr18:739399(-) A-I      intronic
chr18:787229(-) A-I      intronic
chr18:729298(-) A-I      intronic
chr18:737892(-) A-I      intronic
chr18:752821(-) A-I      intronic
chr18:752856(-) A-I      intronic
chr18:787283(-) A-I      intronic
chr18:737827(-) A-I      intronic
chr18:729407(-) A-I      intronic
chr18:787485(-) A-I      intronic
chr18:728761(-) A-I      intronic
chr18:738984(-) A-I      intronic
chr18:738434(-) A-I      intronic
chr18:783701(-) A-I      intronic
chr18:741013(-) A-I      intronic
chr18:763594(-) A-I      intronic
chr18:729719(-) A-I      intronic
chr18:730397(-) A-I      intronic
chr18:776333(-) A-I      intronic
chr18:787233(-) A-I      intronic
chr18:742376(-) A-I      intronic
chr18:780086(-) A-I      intronic
chr18:752303(-) A-I      intronic
chr18:737883(-) A-I      intronic
chr18:763932(-) A-I      intronic
chr18:741385(-) A-I      intronic
chr18:809581(-) A-I      intronic
chr18:728796(-) A-I      intronic
chr18:739351(-) A-I      intronic
chr18:738577(-) A-I      intronic
chr18:725708(-) A-I      intronic
chr18:741387(-) A-I      intronic
chr18:728587(-) A-I      intronic
chr18:738952(-) A-I      intronic
chr18:765025(-) A-I      intronic
chr18:739393(-) A-I      intronic
chr18:803192(-) A-I      intronic
chr18:789538(-) A-I      intronic
chr18:738961(-) A-I      intronic
chr18:787468(-) A-I      intronic
chr18:752213(-) A-I      intronic
chr18:728623(-) A-I      intronic
chr18:752309(-) A-I      intronic
chr18:741170(-) A-I      intronic
chr18:728231(-) A-I      intronic
chr18:725644(-) A-I      intronic
chr18:752210(-) A-I      intronic
chr18:787697(-) A-I      intronic
chr18:739097(-) A-I      intronic
chr18:788805(-) A-I      intronic
chr18:803216(-) A-I      intronic
chr18:739603(-) A-I      intronic
chr18:787599(-) A-I      intronic
chr18:728661(-) A-I      intronic
chr18:737852(-) A-I      intronic
chr18:793435(-) A-I      intronic
chr18:728283(-) A-I      intronic
chr18:737805(-) A-I      intronic
chr18:787301(-) A-I      intronic
chr18:765007(-) A-I      intronic
chr18:739431(-) A-I      intronic
chr18:787630(-) A-I      intronic
chr18:728602(-) A-I      intronic
chr18:763951(-) A-I      intronic
chr18:754586(-) A-I      intronic
chr18:789465(-) A-I      intronic
chr18:729293(-) A-I      intronic
chr18:744528(-) A-I      intronic
chr18:788703(-) A-I      intronic
chr18:787563(-) A-I      intronic
chr18:741720(-) A-I      intronic
chr18:739475(-) A-I      intronic
chr18:738892(-) A-I      intronic
chr18:787452(-) A-I      intronic
chr18:776340(-) A-I      intronic
chr18:738896(-) A-I      intronic
chr18:744639(-) A-I      intronic
chr18:787629(-) A-I      intronic
chr18:738603(-) A-I      intronic
chr18:787562(-) A-I      intronic
chr18:787583(-) A-I      intronic
chr18:742362(-) A-I      intronic
chr18:793611(-) A-I      intronic
chr18:792269(-) A-I      intronic
chr18:787567(-) A-I      intronic
chr18:744627(-) A-I      intronic
chr18:738920(-) A-I      intronic
chr18:753767(-) A-I      intronic
chr18:752831(-) A-I      intronic
chr18:753578(-) A-I      intronic
chr18:780226(-) A-I      intronic
chr18:793537(-) A-I      intronic
chr18:809398(-) A-I      intronic
chr18:771727(-) A-I      intronic
chr18:741721(-) A-I      intronic
chr18:741708(-) A-I      intronic
chr18:793476(-) A-I      intronic
chr18:728699(-) A-I      intronic
chr18:764970(-) A-I      intronic
chr18:789489(-) A-I      intronic
chr18:730413(-) A-I      intronic
chr18:738546(-) A-I      intronic
chr18:787356(-) A-I      intronic
chr18:789429(-) A-I      intronic
chr18:763595(-) A-I      intronic
chr18:737809(-) A-I      intronic
chr18:788755(-) A-I      intronic
chr18:728664(-) A-I      intronic
chr18:738988(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED YES1
chr18:738546(-) A-I intron -    15342557
chr18:738577(-) A-I intron -    15342557
chr18:738578(-) A-I intron -    15342557
chr18:738614(-) A-I intron -    15342557
chr18:738633(-) A-I intron -    15342557
chr18:738892(-) A-I intron -    15342557
chr18:738952(-) A-I intron -    15342557
chr18:738961(-) A-I intron -    15342557
chr18:738984(-) A-I intron -    15342557
chr18:738988(-) A-I intron -    15342557
chr18:728156(-) A-G intron -    22484847
chr18:728539(-) G-A intron -    22484847
chr18:728587(-) A-G intron -    22484847
chr18:728623(-) A-G intron -    22484847
chr18:793580(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase YES1
chr18:722694-722695(-) m6A 3'UTR       27773535
chr18:722728-722729(-) m6A 3'UTR       27773535
chr18:724151-724152(-) m6A 3'UTR       27773535
chr18:724206-724207(-) m6A 3'UTR       24284625//27773535
chr18:724253-724254(-) m6A 3'UTR       24284625//27773535//22608085
chr18:724279-724280(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr18:724307-724308(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr18:724376-724377(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr18:724472-724473(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr18:724507-724508(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr18:724520-724521(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr18:743082-743083(-) m6A CDS       22575960
chr18:743094-743095(-) m6A CDS       22575960
chr18:743287-743288(-) m6A CDS       22575960
chr18:743293-743294(-) m6A CDS       22575960
chr18:756776-756777(-) m6A CDS//exon       24981863
chr18:756801-756802(-) m6A CDS//exon       24981863//27773535
chr18:775098-775099(-) m6A exon//intron       24981863//27773535
chr18:775104-775105(-) m6A exon//intron       24981863//27773535
chr18:787968-787969(-) m6A exon//intron       24981863
chr18:812117-812118(-) m6A 5'UTR//exon//intron       24981863
chr18:812284-812285(-) m6A exon//intron       24981863
chr18:812475-812476(-) m6A 5'UTR       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3150a-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
YES1
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3150a-3p
Interactor2: YES1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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