Detail Information

Basic Information:


  VIRBase ID:  

HHID00072298

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3150a-3p:           PLAGL1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3150a-3p PLAGL1
miRBase
Accession/Entrez ID		 MIMAT0015023 5325
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - LOT1//ZAC//ZAC1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3150a-3p
rs1005806635 chr8:95072962    C/CT
rs372692847 chr8:95072962    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PLAGL1
chr6:144313208(-) A-I      intronic
chr6:144313212(-) A-I      intronic
chr6:144313251(-) A-I      intronic
chr6:144313253(-) A-I      intronic
chr6:144313254(-) A-I      intronic
chr6:144313237(-) A-I      intronic
chr6:144313207(-) A-I      intronic
chr6:144313240(-) A-I      intronic
chr6:144313204(-) A-I      intronic
chr6:144313200(-) A-I      intronic
chr6:144325408(-) A-I      intronic
chr6:144313203(-) A-I      intronic
chr6:144313191(-) A-I      intronic
chr6:144313214(-) A-I      intronic
chr6:144313219(-) A-I      intronic
chr6:144313213(-) A-I      intronic
chr6:144313220(-) A-I      intronic
chr6:144340114(-) A-I      intronic
chr6:144340150(-) A-I      intronic
chr6:144340397(-) A-I      intronic
chr6:144340411(-) A-I      intronic
chr6:144340446(-) A-I      intronic
chr6:144340560(-) A-I      intronic
chr6:144340562(-) A-I      intronic
chr6:144341432(-) A-I      intronic
chr6:144341569(-) A-I      intronic
chr6:144341603(-) A-I      intronic
chr6:144353845(-) A-I      intronic
chr6:144371782(-) A-I      intronic
chr6:144353894(-) A-I      intronic
chr6:144353934(-) A-I      intronic
chr6:144353876(-) A-I      intronic
chr6:144345195(-) A-I      intronic
chr6:144346918(-) A-I      intronic
chr6:144346947(-) A-I      intronic
chr6:144346973(-) A-I      intronic
chr6:144346986(-) A-I      intronic
chr6:144346991(-) A-I      intronic
chr6:144351280(-) A-I      intronic
chr6:144351316(-) A-I      intronic
chr6:144353892(-) A-I      intronic
chr6:144325443(-) A-I      intronic
chr6:144325430(-) A-I      intronic
chr6:144325390(-) A-I      intronic
chr6:144335455(-) A-I      intronic
chr6:144372012(-) A-I      intronic
chr6:144371822(-) A-I      intronic
chr6:144341620(-) A-I      intronic
chr6:144341829(-) A-I      intronic
chr6:144351345(-) A-I      intronic
chr6:144341842(-) A-I      intronic
chr6:144341862(-) A-I      intronic
chr6:144353733(-) A-I      intronic
chr6:144353813(-) A-I      intronic
chr6:144340062(-) A-I      intronic
chr6:144353847(-) A-I      intronic
chr6:144344987(-) A-I      intronic
chr6:144325459(-) A-I      intronic
chr6:144335350(-) A-I      intronic
chr6:144353859(-) A-I      intronic
chr6:144335855(-) A-I      intronic
chr6:144353837(-) A-I      intronic
chr6:144381362(-) A-I      intronic
chr6:144351201(-) A-I      intronic
chr6:144346776(-) A-I      intronic
chr6:144335503(-) A-I      intronic
chr6:144341653(-) A-I      intronic
chr6:144340071(-) A-I      intronic
chr6:144351200(-) A-I      intronic
chr6:144325456(-) A-I      intronic
chr6:144353903(-) A-I      intronic
chr6:144340509(-) A-I      intronic
chr6:144351270(-) A-I      intronic
chr6:144381290(-) A-I      intronic
chr6:144341563(-) A-I      intronic
chr6:144340497(-) A-I      intronic
chr6:144341562(-) A-I      intronic
chr6:144353788(-) A-I      intronic
chr6:144346842(-) A-I      intronic
chr6:144340109(-) A-I      intronic
chr6:144381282(-) A-I      intronic
chr6:144325397(-) A-I      intronic
chr6:144341589(-) A-I      intronic
chr6:144353869(-) A-I      intronic
chr6:144353863(-) A-I      intronic
chr6:144345115(-) A-I      intronic
chr6:144345187(-) A-I      intronic
chr6:144340487(-) A-I      intronic
chr6:144340063(-) A-I      intronic
chr6:144358603(-) A-I      intronic
chr6:144371835(-) A-I      intronic
chr6:144308586(-) A-I      intronic
chr6:144340076(-) A-I      intronic
chr6:144353902(-) A-I      intronic
chr6:144353791(-) A-I      intronic
chr6:144340443(-) A-I      intronic
chr6:144374552(-) A-I      intronic
chr6:144335485(-) A-I      intronic
chr6:144353971(-) A-I      intronic
chr6:144351283(-) A-I      intronic
chr6:144353836(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PLAGL1
chr6:144353837(-) A-I intron -    22327324
chr6:144353859(-) A-I intron -    22327324
chr6:144353863(-) A-I intron -    22327324
chr6:144314245(-) A-T intron -    22484847
chr6:144335349(-) A-G intron -    22484847
chr6:144335375(-) A-G intron -    22484847
chr6:144335485(-) A-G intron -    22484847
chr6:144335486(-) A-G intron -    22484847
chr6:144335503(-) A-G intron -    22484847
chr6:144335855(-) A-G intron -    22484847
chr6:144340063(-) A-G intron -    22484847
chr6:144340071(-) A-G intron -    22484847
chr6:144340076(-) A-G intron -    22484847
chr6:144340109(-) A-G intron -    22484847
chr6:144340443(-) A-G intron -    22484847
chr6:144340487(-) A-G intron -    22484847
chr6:144340497(-) A-G intron -    22484847
chr6:144340509(-) A-G intron -    22484847
chr6:144341501(-) A-G intron -    22484847
chr6:144341562(-) A-G intron -    22484847
chr6:144341563(-) A-G intron -    22484847
chr6:144341589(-) A-G intron -    22484847
chr6:144341653(-) A-G intron -    22484847
chr6:144345051(-) A-G intron -    22484847
chr6:144345052(-) A-G intron -    22484847
chr6:144345115(-) A-G intron -    22484847
chr6:144345186(-) A-G intron -    22484847
chr6:144345187(-) A-G intron -    22484847
chr6:144346770(-) A-G intron -    22484847
chr6:144346776(-) A-G intron -    22484847
chr6:144346842(-) A-G intron -    22484847
chr6:144346854(-) A-G intron -    22484847
chr6:144346861(-) A-G intron -    22484847
chr6:144346908(-) A-G intron -    22484847
chr6:144348109(-) T-C intron -    22484847
chr6:144351200(-) A-G intron -    22484847
chr6:144351201(-) A-G intron -    22484847
chr6:144351270(-) A-G intron -    22484847
chr6:144351283(-) A-G intron -    22484847
chr6:144353382(-) A-G intron -    22484847
chr6:144353788(-) A-G intron -    22484847
chr6:144353791(-) A-G intron -    22484847
chr6:144353836(-) A-G intron -    22484847
chr6:144353837(-) A-G intron -    22484847
chr6:144353859(-) A-G intron -    22484847
chr6:144353863(-) A-G intron -    22484847
chr6:144353869(-) A-G intron -    22484847
chr6:144353902(-) A-G intron -    22484847
chr6:144353903(-) A-G intron -    22484847
chr6:144353971(-) A-G intron -    22484847
chr6:144371835(-) A-G intron -    22484847
chr6:144381362(-) A-G intron -    22484847
chr6:144381478(-) C-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PLAGL1
chr6:144261453-144261454(-) m6A 3'UTR       27773535
chr6:144261475-144261476(-) m6A 3'UTR       27773535
chr6:144261529-144261530(-) m6A 3'UTR       27773535
chr6:144262332-144262333(-) m6A 3'UTR       24284625//24209618//27773535//22575960//22608085
chr6:144262409-144262410(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr6:144262460-144262461(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr6:144262466-144262467(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr6:144262680-144262681(-) m6A CDS       24284625//27773535//22575960
chr6:144262816-144262817(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr6:144262840-144262841(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr6:144262873-144262874(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr6:144262954-144262955(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr6:144263145-144263146(-) m6A CDS       24284625//24209618//24981863//27773535
chr6:144263293-144263294(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr6:144263300-144263301(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:144263303-144263304(-) Cm CDS       -
chr6:144263336-144263337(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:144263404-144263405(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:144263501-144263502(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:144263542-144263543(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:144263596-144263597(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr6:144263705-144263706(-) m6A 5'UTR//CDS       24284625//27773535//22575960
chr6:144263716-144263717(-) m6A 5'UTR//CDS       27773535
chr6:144263728-144263729(-) m6A 5'UTR//CDS       27773535
chr6:144269370-144269371(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr6:144269420-144269421(-) m6A 5'UTR//exon//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr6:144269483-144269484(-) m6A 5'UTR//exon//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr6:144269494-144269495(-) m6A 5'UTR//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr6:144269515-144269516(-) m6A 5'UTR//exon//intron       24284625//24981863//27773535//22575960//22608085
chr6:144269577-144269578(-) m6A 5'UTR//exon//intron       24284625//22608085
chr6:144269584-144269585(-) m6A 5'UTR//exon//intron       24284625//22608085
chr6:144281648-144281649(-) m6A 5'UTR//exon//intron       -
chr6:144281664-144281665(-) m6A 5'UTR//exon//intron       -
chr6:144284823-144284824(-) Am intron       -
chr6:144286393-144286394(-) m6A 5'UTR//intron       -
chr6:144286408-144286409(-) m6A 5'UTR//intron       -
chr6:144287197-144287198(-) m6A 5'UTR//exon//intron       -
chr6:144287209-144287210(-) m6A 5'UTR//exon//intron       -
chr6:144287220-144287221(-) m6A 5'UTR//exon//intron       -
chr6:144287280-144287281(-) m6A 5'UTR//exon//intron       -
chr6:144287297-144287298(-) m6A 5'UTR//exon//intron       -
chr6:144287315-144287316(-) m6A 5'UTR//exon//intron       -
chr6:144287325-144287326(-) m6A 5'UTR//exon//intron       -
chr6:144287348-144287349(-) m6A 5'UTR//exon//intron       -
chr6:144287353-144287354(-) m6A 5'UTR//exon//intron       -
chr6:144290067-144290068(-) m6A 5'UTR//exon       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3150a-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
PLAGL1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3150a-3p
Interactor2: PLAGL1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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