Detail Information

Basic Information:


  VIRBase ID:  

HHID00072188

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-466:           ASB6:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-466 ASB6
miRBase
Accession/Entrez ID		 MIMAT0015002 140459
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-466
rs1368640537 chr3:31161720    G/A
rs1392123954 chr3:31161725    G/A
rs1436733428 chr3:31161724    C/CGTGTAT
rs1460320210 chr3:31161721    T/C
rs148367480 chr3:31161715    T/G
rs540140185 chr3:31161736    T/C
rs548026272 chr3:31161724    C/T
rs1044765198 chr3:31161730    T/C
rs1055171867 chr3:31161731    G/C
rs116476604 chr3:31161729    A/G

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ASB6
chr9:132397070-132397071(-) m6A 3'UTR       -
chr9:132397090-132397091(-) m6A 3'UTR       -
chr9:132397132-132397133(-) m6A 3'UTR       -
chr9:132397173-132397174(-) m6A 3'UTR       -
chr9:132397277-132397278(-) m6A 3'UTR       -
chr9:132397306-132397307(-) m6A 3'UTR       -
chr9:132397328-132397329(-) m6A 3'UTR       -
chr9:132397515-132397516(-) m6A 3'UTR       -
chr9:132397639-132397640(-) m6A 3'UTR       -
chr9:132397720-132397721(-) m6A 3'UTR       -
chr9:132397777-132397778(-) m6A 3'UTR       -
chr9:132397829-132397830(-) m6A 3'UTR       -
chr9:132397863-132397864(-) m6A 3'UTR       -
chr9:132399189-132399190(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr9:132399245-132399246(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr9:132399371-132399372(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr9:132399431-132399432(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr9:132399464-132399465(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr9:132399569-132399570(-) m6A 3'UTR       24284625//24981863
chr9:132399744-132399745(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:132399817-132399818(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:132399871-132399872(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:132400002-132400003(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:132400041-132400042(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:132400300-132400301(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:132400317-132400318(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr9:132400352-132400353(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr9:132400372-132400373(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:132400521-132400522(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:132400651-132400652(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:132400664-132400665(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:132400702-132400703(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr9:132400874-132400875(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr9:132400932-132400933(-) m6A CDS//intron       24284625//27773535//27371828//22575960
chr9:132401515-132401516(-) m6A CDS//intron       24284625//27371828
chr9:132401566-132401567(-) m6A CDS//intron       24284625//27371828
chr9:132401684-132401685(-) m6A CDS       24284625
chr9:132401732-132401733(-) m6A CDS       24284625
chr9:132401741-132401742(-) m6A CDS       24284625
chr9:132404385-132404386(-) m6A 5'UTR       27371828//27773536
chr9:132404408-132404409(-) m6A 5'UTR       27371828//27773536
chr9:132404420-132404421(-) m6A 5'UTR       27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-466
Exosome Serum     18589210
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
ASB6
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-466
Interactor2: ASB6

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...