Detail Information

Basic Information:


  VIRBase ID:  

HHID00072187

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-466:           ATPAF2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-466 ATPAF2
miRBase
Accession/Entrez ID		 MIMAT0015002 91647
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ATP12//ATP12p//LP3663//MC5DN1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-466
rs1368640537 chr3:31161720    G/A
rs1392123954 chr3:31161725    G/A
rs1436733428 chr3:31161724    C/CGTGTAT
rs1460320210 chr3:31161721    T/C
rs148367480 chr3:31161715    T/G
rs540140185 chr3:31161736    T/C
rs548026272 chr3:31161724    C/T
rs1044765198 chr3:31161730    T/C
rs1055171867 chr3:31161731    G/C
rs116476604 chr3:31161729    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ATPAF2
chr17:17926618(-) A-I      intronic
chr17:17934363(-) A-I      intronic
chr17:17934447(-) A-I      intronic
chr17:17934451(-) A-I      intronic
chr17:17936500(-) A-I      intronic
chr17:17934208(-) A-I      intronic
chr17:17933535(-) A-I      intronic
chr17:17926439(-) A-I      intronic
chr17:17934358(-) A-I      intronic
chr17:17937262(-) A-I      intronic
chr17:17937371(-) A-I      intronic
chr17:17937376(-) A-I      intronic
chr17:17939766(-) A-I      intronic
chr17:17939768(-) A-I      intronic
chr17:17925942(-) A-I      intronic
chr17:17926333(-) A-I      intronic
chr17:17925854(-) A-I      intronic
chr17:17924256(-) A-I      intronic
chr17:17934354(-) A-I      intronic
chr17:17934233(-) A-I      intronic
chr17:17940659(-) A-I      intronic
chr17:17940203(-) A-I      intronic
chr17:17938294(-) A-I      intronic
chr17:17925648(-) A-I      intronic
chr17:17926755(-) A-I      intronic
chr17:17924247(-) A-I      intronic
chr17:17933075(-) A-I      intronic
chr17:17925832(-) A-I      intronic
chr17:17926679(-) A-I      intronic
chr17:17933709(-) A-I      intronic
chr17:17924248(-) A-I      intronic
chr17:17930521(-) A-I      intronic
chr17:17940865(-) A-I      intronic
chr17:17925862(-) A-I      intronic
chr17:17933117(-) A-I      intronic
chr17:17925784(-) A-I      intronic
chr17:17924178(-) A-I      intronic
chr17:17924050(-) A-I      intronic
chr17:17926659(-) A-I      intronic
chr17:17922343(-) A-I      intronic
chr17:17934372(-) A-I      intronic
chr17:17926630(-) A-I      intronic
chr17:17925724(-) A-I      intronic
chr17:17925734(-) A-I      intronic
chr17:17924254(-) A-I      intronic
chr17:17925756(-) A-I      intronic
chr17:17922266(-) A-I      intronic
chr17:17926310(-) A-I      intronic
chr17:17934120(-) A-I      intronic
chr17:17933043(-) A-I      intronic
chr17:17925688(-) A-I      intronic
chr17:17933256(-) A-I      intronic
chr17:17925822(-) A-I      intronic
chr17:17922367(-) A-I      intronic
chr17:17922427(-) A-I      intronic
chr17:17933069(-) A-I      intronic
chr17:17926391(-) A-I      intronic
chr17:17926320(-) A-I      intronic
chr17:17926620(-) A-I      intronic
chr17:17936616(-) A-I      intronic
chr17:17940174(-) A-I      intronic
chr17:17936424(-) A-I      intronic
chr17:17934141(-) A-I      intronic
chr17:17922193(-) A-I      intronic
chr17:17925979(-) A-I      intronic
chr17:17925806(-) A-I      intronic
chr17:17930413(-) A-I      intronic
chr17:17933759(-) A-I      intronic
chr17:17933087(-) A-I      intronic
chr17:17925760(-) A-I      intronic
chr17:17925863(-) A-I      intronic
chr17:17926246(-) A-I      intronic
chr17:17933513(-) A-I      intronic
chr17:17939633(-) A-I      intronic
chr17:17934054(-) A-I      intronic
chr17:17933552(-) A-I      intronic
chr17:17933042(-) A-I      intronic
chr17:17925808(-) A-I      intronic
chr17:17925984(-) A-I      intronic
chr17:17924113(-) A-I      intronic
chr17:17925856(-) A-I      intronic
chr17:17925664(-) A-I      intronic
chr17:17926658(-) A-I      intronic
chr17:17926330(-) A-I      intronic
chr17:17926527(-) A-I      intronic
chr17:17930522(-) A-I      intronic
chr17:17936629(-) A-I      intronic
chr17:17925744(-) A-I      intronic
chr17:17924089(-) A-I      intronic
chr17:17925793(-) A-I      intronic
chr17:17922386(-) A-I      intronic
chr17:17924202(-) A-I      intronic
chr17:17936613(-) A-I      intronic
chr17:17925982(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ATPAF2
chr17:17926527(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ATPAF2
chr17:17881086-17881087(-) m6A 3'UTR       27371828
chr17:17881162-17881163(-) m6A 3'UTR       27371828
chr17:17918801-17918802(-) m6A 3'UTR//intron       22608085
chr17:17918877-17918878(-) m6A 3'UTR//intron       24209618//25456834//24981863//27773535//22608085
chr17:17918882-17918883(-) m6A 3'UTR//intron       24209618//25456834//24981863//27773535//22608085
chr17:17918936-17918937(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr17:17918952-17918953(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr17:17919011-17919012(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr17:17919067-17919068(-) m6A 3'UTR//intron       25456834//24981863//27773535//22608085
chr17:17919310-17919311(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr17:17919326-17919327(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr17:17921721-17921722(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//27773536
chr17:17921757-17921758(-) m6A 3'UTR//exon//intron       24284625//27371828//27773536
chr17:17924019-17924020(-) m6A exon//intron       27773535
chr17:17927984-17927985(-) m6A CDS//exon       27773535
chr17:17927995-17927996(-) m6A CDS//exon       27773535
chr17:17929647-17929648(-) m6A CDS//exon       27773535
chr17:17929686-17929687(-) m6A CDS//exon       27773535
chr17:17929704-17929705(-) m6A CDS//exon       27773535
chr17:17929729-17929730(-) m6A CDS//exon       27773535
chr17:17931652-17931653(-) m6A CDS//exon//intron       -
chr17:17931669-17931670(-) m6A CDS//exon//intron       -
chr17:17931675-17931676(-) m6A CDS//exon//intron       -
chr17:17942339-17942340(-) m6A 5'UTR//exon       24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-466
Exosome Serum     18589210
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
ATPAF2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-466
Interactor2: ATPAF2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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