Detail Information

Basic Information:


  VIRBase ID:  

HHID00072167

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-466:           LHFPL2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-466 LHFPL2
miRBase
Accession/Entrez ID		 MIMAT0015002 10184
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-466
rs1368640537 chr3:31161720    G/A
rs1392123954 chr3:31161725    G/A
rs1436733428 chr3:31161724    C/CGTGTAT
rs1460320210 chr3:31161721    T/C
rs148367480 chr3:31161715    T/G
rs540140185 chr3:31161736    T/C
rs548026272 chr3:31161724    C/T
rs1044765198 chr3:31161730    T/C
rs1055171867 chr3:31161731    G/C
rs116476604 chr3:31161729    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LHFPL2
chr5:77941503(-) A-I      intronic
chr5:77941584(-) A-I      intronic
chr5:77941588(-) A-I      intronic
chr5:77941633(-) A-I      intronic
chr5:77941683(-) A-I      intronic
chr5:77913769(-) A-I      intronic
chr5:77827191(-) A-I      intronic
chr5:77858372(-) A-I      intronic
chr5:77858375(-) A-I      intronic
chr5:77913905(-) A-I      intronic
chr5:77913888(-) A-I      intronic
chr5:77785417(-) A-I      intronic
chr5:77785416(-) A-I      intronic
chr5:77858376(-) A-I      intronic
chr5:77785355(-) A-I      intronic
chr5:77785340(-) A-I      intronic
chr5:77785338(-) A-I      intronic
chr5:77785319(-) A-I      intronic
chr5:77785286(-) A-I      intronic
chr5:77896317(-) A-I      intronic
chr5:77896380(-) A-I      intronic
chr5:77896468(-) A-I      intronic
chr5:77896469(-) A-I      intronic
chr5:77896482(-) A-I      intronic
chr5:77941638(-) A-I      intronic
chr5:77941609(-) A-I      intronic
chr5:77941605(-) A-I      intronic
chr5:77898878(-) A-I      intronic
chr5:77941517(-) A-I      intronic
chr5:77941502(-) A-I      intronic
chr5:77900178(-) A-I      intronic
chr5:77900188(-) A-I      intronic
chr5:77900218(-) A-I      intronic
chr5:77900248(-) A-I      intronic
chr5:77912980(-) A-I      intronic
chr5:77913002(-) A-I      intronic
chr5:77913020(-) A-I      intronic
chr5:77913051(-) A-I      intronic
chr5:77913846(-) A-I      intronic
chr5:77913909(-) A-I      intronic
chr5:77913941(-) A-I      intronic
chr5:77913967(-) A-I      intronic
chr5:77826995(-) A-I      intronic
chr5:77827155(-) A-I      intronic
chr5:77827178(-) A-I      intronic
chr5:77931436(-) A-I      intronic
chr5:77931461(-) A-I      intronic
chr5:77931488(-) A-I      intronic
chr5:77939849(-) A-I      intronic
chr5:77939828(-) A-I      intronic
chr5:77939822(-) A-I      intronic
chr5:77931502(-) A-I      intronic
chr5:77931504(-) A-I      intronic
chr5:77931517(-) A-I      intronic
chr5:77931563(-) A-I      intronic
chr5:77931564(-) A-I      intronic
chr5:77933952(-) A-I      intronic
chr5:77939701(-) A-I      intronic
chr5:77939704(-) A-I      intronic
chr5:77939766(-) A-I      intronic
chr5:77939773(-) A-I      intronic
chr5:77913915(-) A-I      intronic
chr5:77939639(-) A-I      intronic
chr5:77913808(-) A-I      intronic
chr5:77859397(-) A-I      intronic
chr5:77785365(-) A-I      intronic
chr5:77913961(-) A-I      intronic
chr5:77786391(-) A-I      intronic
chr5:77939763(-) A-I      intronic
chr5:77786449(-) A-I      intronic
chr5:77913919(-) A-I      intronic
chr5:77902594(-) A-I      intronic
chr5:77922772(-) A-I      intronic
chr5:77913047(-) A-I      intronic
chr5:77939803(-) A-I      intronic
chr5:77785364(-) A-I      intronic
chr5:77786488(-) A-I      intronic
chr5:77912996(-) A-I      intronic
chr5:77913807(-) A-I      intronic
chr5:77859356(-) A-I      intronic
chr5:77913080(-) A-I      intronic
chr5:77913823(-) A-I      intronic
chr5:77859412(-) A-I      intronic
chr5:77912924(-) A-I      intronic
chr5:77941484(-) A-I      intronic
chr5:77939802(-) A-I      intronic
chr5:77913023(-) A-I      intronic
chr5:77896512(-) A-I      intronic
chr5:77786489(-) A-I      intronic
chr5:77885211(-) A-I      intronic
chr5:77827241(-) A-I      intronic
chr5:77785359(-) A-I      intronic
chr5:77891553(-) A-I      intronic
chr5:77941466(-) A-I      intronic
chr5:77785420(-) A-I      intronic
chr5:77827696(-) A-I      intronic
chr5:77913863(-) A-I      intronic
chr5:77900217(-) A-I      intronic
chr5:77912949(-) A-I      intronic
chr5:77884115(-) A-I      intronic
chr5:77913117(-) A-I      intronic
chr5:77914922(-) A-I      intronic
chr5:77915013(-) A-I      intronic
chr5:77913125(-) A-I      intronic
chr5:77913860(-) A-I      intronic
chr5:77922902(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LHFPL2
chr5:77785365(-) A-I intron -    22327324
chr5:77785359(-) A-I intron -    21960545
chr5:77785260(-) T-C intron -    22484847
chr5:77785364(-) A-G intron -    22484847
chr5:77785365(-) A-G intron -    22484847
chr5:77785420(-) A-G intron -    22484847
chr5:77785449(-) T-C intron -    22484847
chr5:77803164(-) T-C intron -    22484847
chr5:77803165(-) C-T intron -    22484847
chr5:77884115(-) A-G intron -    22484847
chr5:77885210(-) A-G intron -    22484847
chr5:77885211(-) A-G intron -    22484847
chr5:77891569(-) G-C intron -    22484847
chr5:77896512(-) A-G intron -    22484847
chr5:77898838(-) A-G intron -    22484847
chr5:77898852(-) A-G intron -    22484847
chr5:77900217(-) A-G intron -    22484847
chr5:77912949(-) A-G intron -    22484847
chr5:77912996(-) A-G intron -    22484847
chr5:77913023(-) A-G intron -    22484847
chr5:77913047(-) A-G intron -    22484847
chr5:77913056(-) A-G intron -    22484847
chr5:77913080(-) A-G intron -    22484847
chr5:77913086(-) A-G intron -    22484847
chr5:77913125(-) A-G intron -    22484847
chr5:77913807(-) A-G intron -    22484847
chr5:77913808(-) A-G intron -    22484847
chr5:77913823(-) A-G intron -    22484847
chr5:77913863(-) A-G intron -    22484847
chr5:77913915(-) A-G intron -    22484847
chr5:77913919(-) A-G intron -    22484847
chr5:77920626(-) G-A intron -    22484847
chr5:77920790(-) A-G intron -    22484847
chr5:77920808(-) A-G intron -    22484847
chr5:77922821(-) A-G intron -    22484847
chr5:77922902(-) A-G intron -    22484847
chr5:77939763(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LHFPL2
chr5:77781069-77781070(-) m6A 3'UTR       24981863//27773535//22608085
chr5:77781150-77781151(-) m6A 3'UTR       24981863//27773535//22608085
chr5:77781177-77781178(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr5:77781196-77781197(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//22608085
chr5:77781262-77781263(-) m6A 3'UTR       24284625//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr5:77781304-77781305(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//22575960//22608085
chr5:77781315-77781316(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//22575960//22608085
chr5:77782338-77782339(-) m6A 3'UTR       26404942
chr5:77782373-77782374(-) m6A 3'UTR       26404942
chr5:77782381-77782382(-) m6A 3'UTR       26404942
chr5:77782418-77782419(-) m6A 3'UTR       24981863
chr5:77782427-77782428(-) m6A 3'UTR       24981863
chr5:77782437-77782438(-) m6A 3'UTR       24981863
chr5:77782444-77782445(-) m6A 3'UTR       24981863
chr5:77782473-77782474(-) m6A 3'UTR       24981863
chr5:77782814-77782815(-) m6A 3'UTR       27773535
chr5:77782947-77782948(-) m6A 3'UTR       26404942
chr5:77782976-77782977(-) m6A 3'UTR       26404942
chr5:77783028-77783029(-) m6A 3'UTR       26404942
chr5:77783073-77783074(-) m6A 3'UTR       26404942//27773535
chr5:77783101-77783102(-) m6A 3'UTR       26404942//27773535
chr5:77783212-77783213(-) m6A 3'UTR       24981863//26404942//27773535
chr5:77783241-77783242(-) m6A 3'UTR       24981863//26404942//27773535//22608085
chr5:77783306-77783307(-) m6A 3'UTR       24981863//26404942//27773535//22608085
chr5:77783339-77783340(-) m6A 3'UTR       24981863//26404942//27773535//22608085
chr5:77783390-77783391(-) m6A 3'UTR       24981863//26404942//27773535//22608085
chr5:77783570-77783571(-) m6A 3'UTR       24981863//27773535//22608085
chr5:77783596-77783597(-) m6A 3'UTR       24981863//27773535//22608085
chr5:77783608-77783609(-) m6A 3'UTR       24981863//27773535//22608085
chr5:77783641-77783642(-) m6A 3'UTR       24981863//27773535//22608085
chr5:77783752-77783753(-) Y 3'UTR       26075521
chr5:77783782-77783783(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535
chr5:77783812-77783813(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535
chr5:77783861-77783862(-) m6A 3'UTR       25456834//24981863//26404942
chr5:77783886-77783887(-) m6A 3'UTR       25456834//24981863//26404942
chr5:77784034-77784035(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085
chr5:77784054-77784055(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784063-77784064(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784101-77784102(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784143-77784144(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784206-77784207(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784235-77784236(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784246-77784247(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784253-77784254(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784260-77784261(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784386-77784387(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr5:77784462-77784463(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr5:77784487-77784488(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr5:77784512-77784513(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr5:77784547-77784548(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr5:77784586-77784587(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784591-77784592(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784637-77784638(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784673-77784674(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:77784708-77784709(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:77784873-77784874(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr5:77784881-77784882(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr5:77784902-77784903(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr5:77784912-77784913(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr5:77784955-77784956(-) Y CDS//exon       26075521
chr5:77786922-77786923(-) m6A exon//intron       24981863//27773535
chr5:77786941-77786942(-) m6A exon//intron       24981863//27773535
chr5:77805800-77805801(-) m6A CDS       25456834//24981863//27773536//22575960//22608085
chr5:77805827-77805828(-) m6A CDS//exon       24209618//25456834//24981863//27773536//22575960//22608085
chr5:77805941-77805942(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr5:77805996-77805997(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:77806043-77806044(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:77806068-77806069(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:77844873-77844874(-) m6A 5'UTR//intron       27371828
chr5:77844885-77844886(-) m6A 5'UTR//intron       27371828
chr5:77844897-77844898(-) m6A 5'UTR//intron       27371828
chr5:77860664-77860665(-) m6A 5'UTR//exon       27371828
chr5:77928136-77928137(-) Y 5'UTR//exon//intron       26075521
chr5:77944513-77944514(-) m6A 5'UTR//exon//intron       24981863//27773536
chr5:78004574-78004575(-) m6A intron       27773535
chr5:78004592-78004593(-) m6A intron       27773535
chr5:78004609-78004610(-) m6A intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-466
Exosome Serum     18589210
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
LHFPL2
Chromatin HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-466
Interactor2: LHFPL2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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