Detail Information

Basic Information:


  VIRBase ID:  

HHID00072165

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-466:           RANBP9:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-466 RANBP9
miRBase
Accession/Entrez ID		 MIMAT0015002 10048
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - BPM-L//BPM90//RanBP7//RANBPM

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-466
rs1368640537 chr3:31161720    G/A
rs1392123954 chr3:31161725    G/A
rs1436733428 chr3:31161724    C/CGTGTAT
rs1460320210 chr3:31161721    T/C
rs148367480 chr3:31161715    T/G
rs540140185 chr3:31161736    T/C
rs548026272 chr3:31161724    C/T
rs1044765198 chr3:31161730    T/C
rs1055171867 chr3:31161731    G/C
rs116476604 chr3:31161729    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RANBP9
chr6:13689276(-) A-I      intronic
chr6:13646476(-) A-I      intronic
chr6:13646397(-) A-I      intronic
chr6:13631268(-) A-I      intronic
chr6:13631246(-) A-I      intronic
chr6:13648493(-) A-I      intronic
chr6:13648503(-) A-I      intronic
chr6:13648528(-) A-I      intronic
chr6:13648553(-) A-I      intronic
chr6:13651723(-) A-I      intronic
chr6:13682367(-) A-I      intronic
chr6:13705524(-) A-I      intronic
chr6:13706403(-) A-I      intronic
chr6:13707042(-) A-I      intronic
chr6:13707110(-) A-I      intronic
chr6:13707380(-) A-I      intronic
chr6:13707464(-) A-I      intronic
chr6:13670362(-) A-I      intronic
chr6:13651759(-) A-I      intronic
chr6:13703377(-) A-I      intronic
chr6:13703399(-) A-I      intronic
chr6:13646485(-) A-I      intronic
chr6:13700017(-) A-I      intronic
chr6:13651808(-) A-I      intronic
chr6:13699901(-) A-I      intronic
chr6:13699860(-) A-I      intronic
chr6:13651892(-) A-I      intronic
chr6:13669981(-) A-I      intronic
chr6:13670403(-) A-I      intronic
chr6:13670432(-) A-I      intronic
chr6:13686460(-) A-I      intronic
chr6:13686429(-) A-I      intronic
chr6:13685928(-) A-I      intronic
chr6:13689272(-) A-I      intronic
chr6:13687668(-) A-I      intronic
chr6:13689289(-) A-I      intronic
chr6:13689507(-) A-I      intronic
chr6:13689579(-) A-I      intronic
chr6:13689587(-) A-I      intronic
chr6:13689600(-) A-I      intronic
chr6:13689671(-) A-I      intronic
chr6:13689709(-) A-I      intronic
chr6:13691940(-) A-I      intronic
chr6:13691960(-) A-I      intronic
chr6:13691990(-) A-I      intronic
chr6:13692058(-) A-I      intronic
chr6:13692092(-) A-I      intronic
chr6:13685918(-) A-I      intronic
chr6:13685917(-) A-I      intronic
chr6:13685705(-) A-I      intronic
chr6:13646459(-) A-I      intronic
chr6:13704597(-) A-I      intronic
chr6:13646462(-) A-I      intronic
chr6:13646479(-) A-I      intronic
chr6:13646493(-) A-I      intronic
chr6:13648458(-) A-I      intronic
chr6:13648487(-) A-I      intronic
chr6:13648555(-) A-I      intronic
chr6:13705370(-) A-I      intronic
chr6:13705444(-) A-I      intronic
chr6:13705511(-) A-I      intronic
chr6:13708582(-) A-I      intronic
chr6:13691233(-) A-I      intronic
chr6:13691216(-) A-I      intronic
chr6:13648557(-) A-I      intronic
chr6:13648558(-) A-I      intronic
chr6:13689265(-) A-I      intronic
chr6:13705512(-) A-I      intronic
chr6:13705514(-) A-I      intronic
chr6:13685701(-) A-I      intronic
chr6:13682307(-) A-I      intronic
chr6:13703277(-) A-I      intronic
chr6:13646615(-) A-I      intronic
chr6:13648583(-) A-I      intronic
chr6:13678314(-) A-I      intronic
chr6:13666954(-) A-I      intronic
chr6:13687652(-) A-I      intronic
chr6:13686886(-) A-I      intronic
chr6:13685722(-) A-I      intronic
chr6:13692119(-) A-I      intronic
chr6:13680905(-) A-I      intronic
chr6:13687637(-) A-I      intronic
chr6:13689743(-) A-I      intronic
chr6:13669880(-) A-I      intronic
chr6:13686491(-) A-I      intronic
chr6:13686080(-) A-I      intronic
chr6:13689284(-) A-I      intronic
chr6:13686087(-) A-I      intronic
chr6:13692999(-) A-I      intronic
chr6:13685763(-) A-I      intronic
chr6:13646551(-) A-I      intronic
chr6:13638806(-) A-I      intronic
chr6:13670028(-) A-I      intronic
chr6:13686077(-) A-I      intronic
chr6:13707454(-) A-I      intronic
chr6:13651120(-) A-I      intronic
chr6:13703365(-) A-I      intronic
chr6:13689618(-) A-I      intronic
chr6:13707532(-) A-I      intronic
chr6:13689353(-) A-I      intronic
chr6:13639683(-) A-I      intronic
chr6:13705983(-) A-I      intronic
chr6:13692098(-) A-I      intronic
chr6:13706464(-) A-I      intronic
chr6:13689766(-) A-I      intronic
chr6:13682822(-) A-I      intronic
chr6:13689128(-) A-I      intronic
chr6:13707500(-) A-I      intronic
chr6:13707523(-) A-I      intronic
chr6:13689614(-) A-I      intronic
chr6:13703341(-) A-I      intronic
chr6:13707420(-) A-I      intronic
chr6:13686713(-) A-I      intronic
chr6:13648518(-) A-I      intronic
chr6:13670003(-) A-I      intronic
chr6:13651113(-) A-I      intronic
chr6:13670029(-) A-I      intronic
chr6:13703274(-) A-I      intronic
chr6:13670001(-) A-I      intronic
chr6:13686444(-) A-I      intronic
chr6:13680941(-) A-I      intronic
chr6:13686379(-) A-I      intronic
chr6:13686690(-) A-I      intronic
chr6:13707450(-) A-I      intronic
chr6:13670004(-) A-I      intronic
chr6:13689327(-) A-I      intronic
chr6:13707112(-) A-I      intronic
chr6:13678343(-) A-I      intronic
chr6:13707393(-) A-I      intronic
chr6:13638804(-) A-I      intronic
chr6:13703376(-) A-I      intronic
chr6:13705418(-) A-I      intronic
chr6:13701919(-) A-I      intronic
chr6:13638818(-) A-I      intronic
chr6:13678223(-) A-I      intronic
chr6:13705973(-) A-I      intronic
chr6:13686116(-) A-I      intronic
chr6:13706476(-) A-I      intronic
chr6:13689141(-) A-I      intronic
chr6:13646594(-) A-I      intronic
chr6:13669985(-) A-I      intronic
chr6:13686391(-) A-I      intronic
chr6:13655438(-) A-I      intronic
chr6:13686891(-) A-I      intronic
chr6:13682712(-) A-I      intronic
chr6:13689733(-) A-I      intronic
chr6:13689732(-) A-I      intronic
chr6:13705904(-) A-I      intronic
chr6:13686434(-) A-I      intronic
chr6:13689161(-) A-I      intronic
chr6:13648547(-) A-I      intronic
chr6:13646607(-) A-I      intronic
chr6:13707348(-) A-I      intronic
chr6:13686629(-) A-I      intronic
chr6:13651765(-) A-I      intronic
chr6:13651101(-) A-I      intronic
chr6:13686585(-) A-I      intronic
chr6:13646636(-) A-I      intronic
chr6:13707122(-) A-I      intronic
chr6:13646558(-) A-I      intronic
chr6:13685689(-) A-I      intronic
chr6:13686590(-) A-I      intronic
chr6:13707394(-) A-I      intronic
chr6:13707367(-) A-I      intronic
chr6:13648540(-) A-I      intronic
chr6:13687714(-) A-I      intronic
chr6:13680926(-) A-I      intronic
chr6:13648562(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RANBP9
chr6:13638806(-) A-G intron -    22484847
chr6:13638880(-) A-G intron -    22484847
chr6:13639683(-) A-G intron -    22484847
chr6:13646551(-) A-G intron -    22484847
chr6:13646607(-) A-G intron -    22484847
chr6:13646636(-) A-G intron -    22484847
chr6:13646641(-) A-G intron -    22484847
chr6:13648518(-) A-G intron -    22484847
chr6:13648568(-) G-A intron -    22484847
chr6:13648583(-) A-G intron -    22484847
chr6:13651084(-) A-G intron -    22484847
chr6:13651765(-) A-G intron -    22484847
chr6:13651778(-) G-C intron -    22484847
chr6:13651784(-) C-A intron -    22484847
chr6:13670001(-) A-G intron -    22484847
chr6:13670028(-) A-G intron -    22484847
chr6:13671033(-) C-T intron -    22484847
chr6:13686077(-) A-G intron -    22484847
chr6:13686080(-) A-G intron -    22484847
chr6:13686087(-) A-G intron -    22484847
chr6:13686116(-) A-G intron -    22484847
chr6:13686891(-) A-G intron -    22484847
chr6:13687652(-) A-G intron -    22484847
chr6:13689618(-) A-G intron -    22484847
chr6:13689679(-) A-G intron -    22484847
chr6:13692078(-) A-G intron -    22484847
chr6:13692098(-) A-G intron -    22484847
chr6:13692113(-) A-G intron -    22484847
chr6:13692119(-) A-G intron -    22484847
chr6:13703280(-) A-G intron -    22484847
chr6:13706849(-) G-A intron -    22484847
chr6:13707419(-) A-G intron -    22484847
chr6:13707420(-) A-G intron -    22484847
chr6:13707477(-) A-G intron -    22484847
chr6:13707497(-) A-G intron -    22484847
chr6:13707523(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RANBP9
chr6:13639904-13639905(-) m6A CDS       27773535
chr6:13644789-13644790(-) m6A CDS       -
chr6:13644830-13644831(-) Tm CDS       -
chr6:13644849-13644850(-) m6A CDS       -
chr6:13644869-13644870(-) m6A CDS       -
chr6:13711257-13711258(-) m6A CDS       24284625//27371828
chr6:13711327-13711328(-) m6A CDS       24284625//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-466
Exosome Serum     18589210
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
RANBP9
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-466
Interactor2: RANBP9

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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