Detail Information

Basic Information:


  VIRBase ID:  

HHID00072154

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-466:           CGGBP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-466 CGGBP1
miRBase
Accession/Entrez ID		 MIMAT0015002 8545
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CGGBP//p20-CGGBP

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-466
rs1368640537 chr3:31161720    G/A
rs1392123954 chr3:31161725    G/A
rs1436733428 chr3:31161724    C/CGTGTAT
rs1460320210 chr3:31161721    T/C
rs148367480 chr3:31161715    T/G
rs540140185 chr3:31161736    T/C
rs548026272 chr3:31161724    C/T
rs1044765198 chr3:31161730    T/C
rs1055171867 chr3:31161731    G/C
rs116476604 chr3:31161729    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CGGBP1
chr3:88165454(-) A-I      intronic
chr3:88138397(-) A-I      intronic
chr3:88138385(-) A-I      intronic
chr3:88138457(-) A-I      intronic
chr3:88138468(-) A-I      intronic
chr3:88138474(-) A-I      intronic
chr3:88138529(-) A-I      intronic
chr3:88138533(-) A-I      intronic
chr3:88138602(-) A-I      intronic
chr3:88138610(-) A-I      intronic
chr3:88155523(-) A-I      intronic
chr3:88155603(-) A-I      intronic
chr3:88155616(-) A-I      intronic
chr3:88165508(-) A-I      intronic
chr3:88165542(-) A-I      intronic
chr3:88138196(-) A-I      intronic
chr3:88138111(-) A-I      intronic
chr3:88138165(-) A-I      intronic
chr3:88171997(-) A-I      intronic
chr3:88137969(-) A-I      intronic
chr3:88172077(-) A-I      intronic
chr3:88172121(-) A-I      intronic
chr3:88137970(-) A-I      intronic
chr3:88138209(-) A-I      intronic
chr3:88154207(-) A-I      intronic
chr3:88138087(-) A-I      intronic
chr3:88138079(-) A-I      intronic
chr3:88137965(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CGGBP1
chr3:88152257(-) A-I intron -    22327324
chr3:88197908(-) T-C intron -    22484847
chr3:88197919(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CGGBP1
chr3:88104100-88104101(-) m6A 3'UTR       24981863
chr3:88104149-88104150(-) m6A 3'UTR       24981863//22608085
chr3:88104253-88104254(-) m6A 3'UTR       24981863
chr3:88104695-88104696(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr3:88104809-88104810(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:88104834-88104835(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr3:88104930-88104931(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr3:88105006-88105007(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr3:88105077-88105078(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//22608085
chr3:88105088-88105089(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//22608085
chr3:88105147-88105148(-) m6A 5'UTR       24284625//24209618//24981863//26404942//22608085
chr3:88105191-88105192(-) m6A 5'UTR//intron       24284625//22608085
chr3:88107147-88107148(-) m6A exon//intron       27773535
chr3:88107155-88107156(-) m6A exon//intron       27773535
chr3:88107163-88107164(-) m6A exon//intron       27773535
chr3:88107176-88107177(-) m6A 5'UTR//exon//intron       27773535
chr3:88107183-88107184(-) m6A 5'UTR//exon//intron       27773535
chr3:88107215-88107216(-) m6A 5'UTR//exon//intron       27773535
chr3:88107264-88107265(-) m6A 5'UTR//exon//intron       27773535
chr3:88107292-88107293(-) m6A 5'UTR//exon//intron       27773535
chr3:88107321-88107322(-) m6A 5'UTR//exon//intron       27773535
chr3:88108120-88108121(-) m6A 5'UTR//intron       24981863
chr3:88190203-88190204(-) m6A 5'UTR       -
chr3:88190210-88190211(-) m6A 5'UTR       -
chr3:88198937-88198938(-) m6A 5'UTR       24981863//22608085
chr3:88198943-88198944(-) m6A 5'UTR       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-466
Exosome Serum     18589210
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
CGGBP1
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-466
Interactor2: CGGBP1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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