Detail Information

Basic Information:


  VIRBase ID:  

HHID00072118

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3130-3p:           DAZAP2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3130-3p DAZAP2
miRBase
Accession/Entrez ID		 MIMAT0014994 9802
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - PRTB

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3130-3p
rs115772313 chr2:206783285    G/A
rs1424281602 chr2:206783288    G/A
rs2241347 chr2:206783257    C/T
rs544646499 chr2:206783277    G/C
rs775911095 chr2:206783265    C/T
rs1008838164 chr2:206783262    C/T
rs1485175751 chr2:206783280    G/A
rs753206695 chr2:206783278    C/T
rs754690230 chr2:206783258    G/A
rs758818628 chr2:206783284    C/A
rs758818628 chr2:206783284    C/T
rs964681358 chr2:206783283    C/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DAZAP2
chr12:51635585(+) A-I      intronic
chr12:51635472(+) A-I      intronic
chr12:51635574(+) A-I      intronic
chr12:51635594(+) A-I      intronic
chr12:51635609(+) A-I      intronic
chr12:51635625(+) A-I      intronic
chr12:51638085(+) A-I      intronic
chr12:51638161(+) A-I      intronic
chr12:51635518(+) A-I      intronic
chr12:51635521(+) A-I      intronic
chr12:51638006(+) A-I      intronic
chr12:51633566(+) A-I      intronic
chr12:51638098(+) A-I      intronic
chr12:51635519(+) A-I      intronic
chr12:51638164(+) A-I      intronic
chr12:51638244(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DAZAP2
chr12:51635518(+) A-G intron -    22484847
chr12:51635519(+) A-G intron -    22484847
chr12:51635629(+) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DAZAP2
chr12:51632599-51632600(+) m6A 5'UTR       24284625//25456834//24981863//26404942//27773535//22608085
chr12:51632628-51632629(+) m6A 5'UTR//exon       24284625//25456834//24981863//26404942//27773535//27371828//22608085
chr12:51632669-51632670(+) m6A 5'UTR//exon       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:51632678-51632679(+) m6A 5'UTR//exon       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:51632695-51632696(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:51632710-51632711(+) m6A exon//intron       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:51634188-51634189(+) m6A 5'UTR//CDS//exon//intron       24284625//24209618//24981863
chr12:51634269-51634270(+) m6A exon//intron       24284625//24981863//22575960
chr12:51637021-51637022(+) m6A 3'UTR//exon//intron       26404942
chr12:51637037-51637038(+) m6A 3'UTR//exon//intron       26404942
chr12:51637054-51637055(+) m6A 3'UTR//exon//intron       26404942
chr12:51637066-51637067(+) m6A 3'UTR//exon//intron       26404942
chr12:51639887-51639888(+) m6A CDS//intron       27773535
chr12:51640038-51640039(+) m6A 3'UTR//intron       27773535
chr12:51640110-51640111(+) m6A 3'UTR//intron       24209618
chr12:51640189-51640190(+) m6A 3'UTR//intron       24209618
chr12:51664532-51664533(+) m6A 3'UTR       24209618//25456834//22608085
chr12:51664659-51664660(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr12:51664672-51664673(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr12:51664978-51664979(+) m6A 3'UTR       24981863
chr12:51665083-51665084(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3130-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
DAZAP2
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3130-3p
Interactor2: DAZAP2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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