Detail Information

Basic Information:


  VIRBase ID:  

HHID00072081

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           RBM12B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p RBM12B
miRBase
Accession/Entrez ID		 MIMAT0014983 389677
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - MGC:33837

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RBM12B
chr8:94743339(-) A-I      3'UTR
chr8:94743306(-) A-I      3'UTR
chr8:94743217(-) A-I      3'UTR
chr8:94743197(-) A-I      3'UTR
chr8:94743167(-) A-I      3'UTR
chr8:94743223(-) A-I      intronic
chr8:94743267(-) A-I      intronic
chr8:94743221(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RBM12B
chr8:94750780(-) T-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RBM12B
chr8:94744900-94744901(-) m6A 3'UTR//intron       27773535
chr8:94744905-94744906(-) m6A 3'UTR//intron       27773535
chr8:94744926-94744927(-) m6A 3'UTR//intron       27773535
chr8:94745114-94745115(-) m6A 3'UTR//intron       27773535
chr8:94745714-94745715(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr8:94745810-94745811(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:94746040-94746041(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr8:94746058-94746059(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr8:94746065-94746066(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr8:94746089-94746090(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr8:94746113-94746114(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746161-94746162(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746185-94746186(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746209-94746210(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746295-94746296(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr8:94746415-94746416(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746497-94746498(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746593-94746594(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746617-94746618(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746665-94746666(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746689-94746690(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746713-94746714(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746761-94746762(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746785-94746786(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746857-94746858(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746881-94746882(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746905-94746906(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746926-94746927(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746947-94746948(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94746968-94746969(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:94747040-94747041(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr8:94747054-94747055(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr8:94747061-94747062(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr8:94747094-94747095(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr8:94747219-94747220(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:94747236-94747237(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:94747256-94747257(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:94747282-94747283(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:94747373-94747374(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr8:94747441-94747442(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr8:94747486-94747487(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr8:94747555-94747556(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr8:94747602-94747603(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr8:94747631-94747632(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr8:94747641-94747642(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr8:94747668-94747669(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr8:94747702-94747703(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:94747812-94747813(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:94747852-94747853(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:94747882-94747883(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:94747948-94747949(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:94748077-94748078(-) m6A CDS//intron       24209618//27773535//22608085
chr8:94748199-94748200(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr8:94748224-94748225(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr8:94748340-94748341(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr8:94748376-94748377(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr8:94748394-94748395(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr8:94753230-94753231(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
RBM12B
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: RBM12B

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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