Basic Information:

  VIRBase ID:  

HHID00072078

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:  MIMAT0014983          TCAIM:  NM_001029839     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3121-3p	TCAIM
miRBase Accession/Entrez ID	MIMAT0014983	285343
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	C3orf23//TOAG-1//TOAG1

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3121-3p	rs1006143795 chr1:180438334    T/C rs778817728 chr1:180438323    T/C rs887772082 chr1:180438327    C/T rs911596096 chr1:180438331    G/C

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TCAIM	chr3:44414203(+) A-I      intronic chr3:44414187(+) A-I      intronic chr3:44412771(+) A-I      intronic chr3:44412723(+) A-I      intronic chr3:44412680(+) A-I      intronic chr3:44412638(+) A-I      intronic chr3:44416093(+) A-I      intronic chr3:44416092(+) A-I      intronic chr3:44412626(+) A-I      intronic chr3:44412613(+) A-I      intronic chr3:44411889(+) A-I      intronic chr3:44411869(+) A-I      intronic chr3:44411833(+) A-I      intronic chr3:44414348(+) A-I      intronic chr3:44411792(+) A-I      intronic chr3:44411776(+) A-I      intronic chr3:44411775(+) A-I      intronic chr3:44411774(+) A-I      intronic chr3:44416015(+) A-I      intronic chr3:44411737(+) A-I      intronic chr3:44411725(+) A-I      intronic chr3:44410499(+) A-I      intronic chr3:44410485(+) A-I      intronic chr3:44410376(+) A-I      intronic chr3:44410363(+) A-I      intronic chr3:44410354(+) A-I      intronic chr3:44410349(+) A-I      intronic chr3:44410329(+) A-I      intronic chr3:44410315(+) A-I      intronic chr3:44410313(+) A-I      intronic chr3:44410305(+) A-I      intronic chr3:44410282(+) A-I      intronic chr3:44410257(+) A-I      intronic chr3:44407883(+) A-I      intronic chr3:44407880(+) A-I      intronic chr3:44416091(+) A-I      intronic chr3:44407873(+) A-I      intronic chr3:44407828(+) A-I      intronic chr3:44407082(+) A-I      intronic chr3:44406985(+) A-I      intronic chr3:44406140(+) A-I      intronic chr3:44412601(+) A-I      intronic chr3:44405982(+) A-I      intronic chr3:44406004(+) A-I      intronic chr3:44406008(+) A-I      intronic chr3:44406009(+) A-I      intronic chr3:44406010(+) A-I      intronic chr3:44406018(+) A-I      intronic chr3:44406057(+) A-I      intronic chr3:44406071(+) A-I      intronic chr3:44406146(+) A-I      intronic chr3:44410289(+) A-I      intronic chr3:44410300(+) A-I      intronic chr3:44410319(+) A-I      intronic chr3:44410351(+) A-I      intronic chr3:44410355(+) A-I      intronic chr3:44411827(+) A-I      intronic chr3:44411837(+) A-I      intronic chr3:44411841(+) A-I      intronic chr3:44411842(+) A-I      intronic chr3:44411845(+) A-I      intronic chr3:44411854(+) A-I      intronic chr3:44412543(+) A-I      intronic chr3:44412716(+) A-I      intronic chr3:44412747(+) A-I      intronic chr3:44412759(+) A-I      intronic chr3:44412772(+) A-I      intronic chr3:44414963(+) A-I      intronic chr3:44406128(+) A-I      intronic chr3:44406055(+) A-I      intronic chr3:44406000(+) A-I      intronic chr3:44416001(+) A-I      intronic chr3:44405999(+) A-I      intronic chr3:44405538(+) A-I      intronic chr3:44405333(+) A-I      intronic chr3:44405312(+) A-I      intronic chr3:44405307(+) A-I      intronic chr3:44402332(+) A-I      intronic chr3:44398793(+) A-I      intronic chr3:44385689(+) A-I      intronic chr3:44385687(+) A-I      intronic chr3:44385665(+) A-I      intronic chr3:44384509(+) A-I      intronic chr3:44414976(+) A-I      intronic chr3:44384464(+) A-I      intronic chr3:44414987(+) A-I      intronic chr3:44384443(+) A-I      intronic chr3:44415055(+) A-I      intronic chr3:44415957(+) A-I      intronic chr3:44416202(+) A-I      intronic chr3:44414911(+) A-I      intronic chr3:44414243(+) A-I      intronic chr3:44416178(+) A-I      intronic chr3:44416103(+) A-I      intronic chr3:44384442(+) A-I      intronic chr3:44416102(+) A-I      intronic chr3:44416101(+) A-I      intronic chr3:44412750(+) A-I      intronic chr3:44414902(+) A-I      intronic chr3:44414351(+) A-I      intronic chr3:44414297(+) A-I      intronic chr3:44435228(+) A-I      intronic chr3:44414225(+) A-I      intronic chr3:44414215(+) A-I      intronic chr3:44432822(+) A-I      intronic chr3:44432798(+) A-I      intronic chr3:44432761(+) A-I      intronic chr3:44416235(+) A-I      intronic chr3:44416223(+) A-I      intronic chr3:44416208(+) A-I      intronic chr3:44416142(+) A-I      intronic chr3:44416138(+) A-I      intronic chr3:44416122(+) A-I      intronic chr3:44416110(+) A-I      intronic chr3:44416052(+) A-I      intronic chr3:44415976(+) A-I      intronic chr3:44415970(+) A-I      intronic chr3:44415150(+) A-I      intronic chr3:44415095(+) A-I      intronic chr3:44415031(+) A-I      intronic chr3:44415010(+) A-I      intronic chr3:44414986(+) A-I      intronic chr3:44414982(+) A-I      intronic chr3:44414204(+) A-I      intronic chr3:44400632(+) A-I      3'UTR chr3:44385643(+) A-I      intronic chr3:44412770(+) A-I      intronic chr3:44414995(+) A-I      intronic chr3:44398739(+) A-I      intronic chr3:44410362(+) A-I      intronic chr3:44412740(+) A-I      intronic chr3:44414129(+) A-I      intronic chr3:44412303(+) A-I      intronic chr3:44416053(+) A-I      intronic chr3:44410352(+) A-I      intronic chr3:44408291(+) A-I      intronic chr3:44385684(+) A-I      intronic chr3:44405336(+) A-I      intronic chr3:44410276(+) A-I      intronic chr3:44432750(+) A-I      intronic chr3:44427114(+) A-I      intronic chr3:44416155(+) A-I      intronic chr3:44414900(+) A-I      intronic chr3:44414903(+) A-I      intronic chr3:44410461(+) A-I      intronic chr3:44415052(+) A-I      intronic chr3:44402337(+) A-I      intronic chr3:44410394(+) A-I      intronic chr3:44405983(+) A-I      intronic chr3:44402327(+) A-I      intronic chr3:44412502(+) A-I      intronic chr3:44430528(+) A-I      intronic chr3:44412604(+) A-I      intronic chr3:44414880(+) A-I      intronic chr3:44414993(+) A-I      intronic chr3:44412333(+) A-I      intronic chr3:44385678(+) A-I      intronic chr3:44412334(+) A-I      intronic chr3:44385751(+) A-I      intronic chr3:44405977(+) A-I      intronic chr3:44415025(+) A-I      intronic chr3:44397940(+) A-I      intronic chr3:44449395(+) A-I      3'UTR chr3:44400658(+) A-I      3'UTR chr3:44400691(+) A-I      3'UTR chr3:44400645(+) A-I      3'UTR chr3:44400622(+) A-I      3'UTR chr3:44411868(+) A-I      intronic chr3:44414994(+) A-I      intronic chr3:44412678(+) A-I      intronic chr3:44410416(+) A-I      intronic chr3:44406950(+) A-I      intronic chr3:44415990(+) A-I      intronic chr3:44412824(+) A-I      intronic chr3:44412519(+) A-I      intronic chr3:44431928(+) A-I      intronic chr3:44415092(+) A-I      intronic chr3:44412730(+) A-I      intronic chr3:44385763(+) A-I      intronic chr3:44406135(+) A-I      intronic chr3:44414102(+) A-I      intronic chr3:44416046(+) A-I      intronic chr3:44385713(+) A-I      intronic chr3:44412587(+) A-I      intronic chr3:44402210(+) A-I      intronic chr3:44410333(+) A-I      intronic chr3:44410460(+) A-I      intronic chr3:44405618(+) A-I      intronic chr3:44410372(+) A-I      intronic chr3:44407017(+) A-I      intronic chr3:44406978(+) A-I      intronic chr3:44384574(+) A-I      intronic chr3:44415106(+) A-I      intronic chr3:44410440(+) A-I      intronic chr3:44416210(+) A-I      intronic chr3:44410358(+) A-I      intronic chr3:44410417(+) A-I      intronic chr3:44406921(+) A-I      intronic chr3:44414919(+) A-I      intronic chr3:44406154(+) A-I      intronic chr3:44412541(+) A-I      intronic chr3:44407029(+) A-I      intronic chr3:44414933(+) A-I      intronic chr3:44412547(+) A-I      intronic chr3:44406159(+) A-I      intronic chr3:44405649(+) A-I      intronic chr3:44412739(+) A-I      intronic chr3:44412707(+) A-I      intronic chr3:44412578(+) A-I      intronic chr3:44412373(+) A-I      intronic chr3:44414920(+) A-I      intronic chr3:44410316(+) A-I      intronic chr3:44412503(+) A-I      intronic chr3:44416098(+) A-I      intronic chr3:44407072(+) A-I      intronic chr3:44385704(+) A-I      intronic chr3:44410260(+) A-I      intronic chr3:44416047(+) A-I      intronic chr3:44406054(+) A-I      intronic chr3:44407000(+) A-I      intronic chr3:44416106(+) A-I      intronic chr3:44412764(+) A-I      intronic chr3:44414360(+) A-I      intronic chr3:44414268(+) A-I      intronic chr3:44398674(+) A-I      intronic chr3:44410425(+) A-I      intronic chr3:44415035(+) A-I      intronic chr3:44410314(+) A-I      intronic chr3:44406847(+) A-I      intronic chr3:44407094(+) A-I      intronic chr3:44416014(+) A-I      intronic chr3:44414949(+) A-I      intronic chr3:44416187(+) A-I      intronic chr3:44412584(+) A-I      intronic chr3:44412363(+) A-I      intronic chr3:44392551(+) A-I      intronic chr3:44402281(+) A-I      intronic chr3:44416146(+) A-I      intronic chr3:44412802(+) A-I      intronic chr3:44447164(+) A-I      intronic chr3:44385593(+) A-I      intronic chr3:44415993(+) A-I      intronic chr3:44414150(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TCAIM	chr3:44379699-44379700(+) m6A 5'UTR//exon       24284625//24981863 chr3:44379715-44379716(+) m6A 5'UTR//exon       24284625//24981863//27371828 chr3:44400012-44400013(+) m6A 3'UTR//intron       27773535 chr3:44409035-44409036(+) m6A CDS//exon       22608085 chr3:44409118-44409119(+) m6A 3'UTR//CDS//exon       22608085 chr3:44442807-44442808(+) m6A 3'UTR//CDS//exon       22608085 chr3:44442814-44442815(+) Am 3'UTR//CDS//exon       - chr3:44449047-44449048(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085 chr3:44449056-44449057(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085 chr3:44449127-44449128(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085 chr3:44449214-44449215(+) m6A 3'UTR//exon       24981863//22608085 chr3:44449272-44449273(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3121-3p	Exosome Plasma     23663360 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Mesenchymal stem cells     -
	TCAIM	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3121-3p
Interactor2: TCAIM

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	CDS
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.