Detail Information

Basic Information:


  VIRBase ID:  

HHID00072077

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           EOGT:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p EOGT
miRBase
Accession/Entrez ID		 MIMAT0014983 285203
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - AER61//AOS4//C3orf64//EOGT1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR EOGT
chr3:69053153(-) A-I      intronic
chr3:69053162(-) A-I      intronic
chr3:69043879(-) A-I      intronic
chr3:69053164(-) A-I      intronic
chr3:69031276(-) A-I      intronic
chr3:69031273(-) A-I      intronic
chr3:69031150(-) A-I      intronic
chr3:69031466(-) A-I      intronic
chr3:69050409(-) A-I      intronic
chr3:69031479(-) A-I      intronic
chr3:69038855(-) A-I      intronic
chr3:69038774(-) A-I      intronic
chr3:69038771(-) A-I      intronic
chr3:69038764(-) A-I      intronic
chr3:69031649(-) A-I      intronic
chr3:69031619(-) A-I      intronic
chr3:69031584(-) A-I      intronic
chr3:69031454(-) A-I      intronic
chr3:69039737(-) A-I      intronic
chr3:69039533(-) A-I      intronic
chr3:69039084(-) A-I      intronic
chr3:69043698(-) A-I      intronic
chr3:69038997(-) A-I      intronic
chr3:69038860(-) A-I      intronic
chr3:69031287(-) A-I      intronic
chr3:69031237(-) A-I      intronic
chr3:69031222(-) A-I      intronic
chr3:69031093(-) A-I      intronic
chr3:69049168(-) A-I      intronic
chr3:69049181(-) A-I      intronic
chr3:69046699(-) A-I      intronic
chr3:69049370(-) A-I      intronic
chr3:69039700(-) A-I      intronic
chr3:69039708(-) A-I      intronic
chr3:69043371(-) A-I      intronic
chr3:69043433(-) A-I      intronic
chr3:69047986(-) A-I      intronic
chr3:69047848(-) A-I      intronic
chr3:69047842(-) A-I      intronic
chr3:69046792(-) A-I      intronic
chr3:69046648(-) A-I      intronic
chr3:69043916(-) A-I      intronic
chr3:69043777(-) A-I      intronic
chr3:69043771(-) A-I      intronic
chr3:69049155(-) A-I      intronic
chr3:69043686(-) A-I      intronic
chr3:69050204(-) A-I      intronic
chr3:69040863(-) A-I      intronic
chr3:69040858(-) A-I      intronic
chr3:69040845(-) A-I      intronic
chr3:69039778(-) A-I      intronic
chr3:69039777(-) A-I      intronic
chr3:69039769(-) A-I      intronic
chr3:69039580(-) A-I      intronic
chr3:69039566(-) A-I      intronic
chr3:69039556(-) A-I      intronic
chr3:69039718(-) A-I      intronic
chr3:69043443(-) A-I      intronic
chr3:69046662(-) A-I      intronic
chr3:69039732(-) A-I      intronic
chr3:69051217(-) A-I      intronic
chr3:69043383(-) A-I      intronic
chr3:69026189(-) A-I      3'UTR
chr3:69026199(-) A-I      3'UTR
chr3:69026202(-) A-I      3'UTR
chr3:69026229(-) A-I      3'UTR
chr3:69039023(-) A-I      intronic
chr3:69043214(-) A-I      intronic
chr3:69046652(-) A-I      intronic
chr3:69031140(-) A-I      intronic
chr3:69039764(-) A-I      intronic
chr3:69043763(-) A-I      intronic
chr3:69043880(-) A-I      intronic
chr3:69037285(-) A-I      intronic
chr3:69039600(-) A-I      intronic
chr3:69031209(-) A-I      intronic
chr3:69039677(-) A-I      intronic
chr3:69043760(-) A-I      intronic
chr3:69046702(-) A-I      intronic
chr3:69031182(-) A-I      intronic
chr3:69043237(-) A-I      intronic
chr3:69039642(-) A-I      intronic
chr3:69039625(-) A-I      intronic
chr3:69031134(-) A-I      intronic
chr3:69039089(-) A-I      intronic
chr3:69043379(-) A-I      intronic
chr3:69031426(-) A-I      intronic
chr3:69043464(-) A-I      intronic
chr3:69049103(-) A-I      intronic
chr3:69049315(-) A-I      intronic
chr3:69038656(-) A-I      intronic
chr3:69032870(-) A-I      intronic
chr3:69051943(-) A-I      intronic
chr3:69043238(-) A-I      intronic
chr3:69046689(-) A-I      intronic
chr3:69031169(-) A-I      intronic
chr3:69031486(-) A-I      intronic
chr3:69039751(-) A-I      intronic
chr3:69039569(-) A-I      intronic
chr3:69046723(-) A-I      intronic
chr3:69043788(-) A-I      intronic
chr3:69049325(-) A-I      intronic
chr3:69031453(-) A-I      intronic
chr3:69039576(-) A-I      intronic
chr3:69049376(-) A-I      intronic
chr3:69046644(-) A-I      intronic
chr3:69052094(-) A-I      intronic
chr3:69031261(-) A-I      intronic
chr3:69031272(-) A-I      intronic
chr3:69043939(-) A-I      intronic
chr3:69039632(-) A-I      intronic
chr3:69046795(-) A-I      intronic
chr3:69043780(-) A-I      intronic
chr3:69047974(-) A-I      intronic
chr3:69047802(-) A-I      intronic
chr3:69046622(-) A-I      intronic
chr3:69047919(-) A-I      intronic
chr3:69049116(-) A-I      intronic
chr3:69047912(-) A-I      intronic
chr3:69031547(-) A-I      intronic
chr3:69043463(-) A-I      intronic
chr3:69043413(-) A-I      intronic
chr3:69038654(-) A-I      intronic
chr3:69031248(-) A-I      intronic
chr3:69049282(-) A-I      intronic
chr3:69046698(-) A-I      intronic
chr3:69031427(-) A-I      intronic
chr3:69039609(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED EOGT
chr3:69046795(-) A-I intron -    21960545
chr3:69031140(-) A-G intron -    22484847
chr3:69031143(-) A-G intron -    22484847
chr3:69031169(-) A-G intron -    22484847
chr3:69031182(-) A-G intron -    22484847
chr3:69031549(-) A-G intron -    22484847
chr3:69039764(-) A-G intron -    22484847
chr3:69043379(-) A-G intron -    22484847
chr3:69046616(-) A-G intron -    22484847
chr3:69046644(-) A-G intron -    22484847
chr3:69046702(-) A-G intron -    22484847
chr3:69047770(-) A-G intron -    22484847
chr3:69047802(-) A-G intron -    22484847
chr3:69047839(-) A-G intron -    22484847
chr3:69047912(-) A-G intron -    22484847
chr3:69047974(-) A-G intron -    22484847
chr3:69049282(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase EOGT
chr3:69024367-69024368(-) m6A 3'UTR       27773535
chr3:69024497-69024498(-) m6A 3'UTR//exon       27773535
chr3:69024510-69024511(-) m6A 3'UTR//exon       27773535
chr3:69024549-69024550(-) m6A 3'UTR//exon       24981863//27773535
chr3:69024601-69024602(-) m6A 3'UTR//exon       24981863//27773535
chr3:69024627-69024628(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr3:69025825-69025826(-) m6A 3'UTR//exon       27773535
chr3:69025834-69025835(-) m6A 3'UTR//exon       27773535
chr3:69028893-69028894(-) m6A 3'UTR//CDS//exon       27773535
chr3:69028934-69028935(-) m6A 3'UTR//CDS//exon       27773535
chr3:69031936-69031937(-) m6A exon//intron       27773535
chr3:69062779-69062780(-) m6A 5'UTR       25456834//24981863//22608085
chr3:69063082-69063083(-) m6A 5'UTR       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
EOGT
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: EOGT

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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