Detail Information

Basic Information:


  VIRBase ID:  

HHID00072068

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           MARCHF3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p MARCHF3
miRBase
Accession/Entrez ID		 MIMAT0014983 115123
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - MARCH-III//MARCH3//RNF173

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MARCHF3
chr5:126315540(-) A-I      intronic
chr5:126310911(-) A-I      intronic
chr5:126341032(-) A-I      intronic
chr5:126341031(-) A-I      intronic
chr5:126341016(-) A-I      intronic
chr5:126207484(-) A-I      intronic
chr5:126310831(-) A-I      intronic
chr5:126279678(-) A-I      intronic
chr5:126339200(-) A-I      intronic
chr5:126341005(-) A-I      intronic
chr5:126340992(-) A-I      intronic
chr5:126310824(-) A-I      intronic
chr5:126310760(-) A-I      intronic
chr5:126339398(-) A-I      intronic
chr5:126207507(-) A-I      intronic
chr5:126207523(-) A-I      intronic
chr5:126207536(-) A-I      intronic
chr5:126207555(-) A-I      intronic
chr5:126207592(-) A-I      intronic
chr5:126207630(-) A-I      intronic
chr5:126207642(-) A-I      intronic
chr5:126304437(-) A-I      intronic
chr5:126304461(-) A-I      intronic
chr5:126304468(-) A-I      intronic
chr5:126304470(-) A-I      intronic
chr5:126304471(-) A-I      intronic
chr5:126304480(-) A-I      intronic
chr5:126304485(-) A-I      intronic
chr5:126279592(-) A-I      intronic
chr5:126279600(-) A-I      intronic
chr5:126316174(-) A-I      intronic
chr5:126315601(-) A-I      intronic
chr5:126212515(-) A-I      intronic
chr5:126307041(-) A-I      intronic
chr5:126280268(-) A-I      intronic
chr5:126287602(-) A-I      intronic
chr5:126287671(-) A-I      intronic
chr5:126287676(-) A-I      intronic
chr5:126279601(-) A-I      intronic
chr5:126287677(-) A-I      intronic
chr5:126287734(-) A-I      intronic
chr5:126290183(-) A-I      intronic
chr5:126307019(-) A-I      intronic
chr5:126307017(-) A-I      intronic
chr5:126306974(-) A-I      intronic
chr5:126305984(-) A-I      intronic
chr5:126305983(-) A-I      intronic
chr5:126304305(-) A-I      intronic
chr5:126305973(-) A-I      intronic
chr5:126305957(-) A-I      intronic
chr5:126304328(-) A-I      intronic
chr5:126290187(-) A-I      intronic
chr5:126290201(-) A-I      intronic
chr5:126292254(-) A-I      intronic
chr5:126292261(-) A-I      intronic
chr5:126279641(-) A-I      intronic
chr5:126292707(-) A-I      intronic
chr5:126341078(-) A-I      intronic
chr5:126336614(-) A-I      intronic
chr5:126336578(-) A-I      intronic
chr5:126328731(-) A-I      intronic
chr5:126304303(-) A-I      intronic
chr5:126315593(-) A-I      intronic
chr5:126212427(-) A-I      intronic
chr5:126212480(-) A-I      intronic
chr5:126212518(-) A-I      intronic
chr5:126212519(-) A-I      intronic
chr5:126212545(-) A-I      intronic
chr5:126258417(-) A-I      intronic
chr5:126258422(-) A-I      intronic
chr5:126279213(-) A-I      intronic
chr5:126328667(-) A-I      intronic
chr5:126328624(-) A-I      intronic
chr5:126328602(-) A-I      intronic
chr5:126328561(-) A-I      intronic
chr5:126327377(-) A-I      intronic
chr5:126327361(-) A-I      intronic
chr5:126327330(-) A-I      intronic
chr5:126279223(-) A-I      intronic
chr5:126327268(-) A-I      intronic
chr5:126316187(-) A-I      intronic
chr5:126224560(-) A-I      intronic
chr5:126279643(-) A-I      intronic
chr5:126340988(-) A-I      intronic
chr5:126305882(-) A-I      intronic
chr5:126210077(-) A-I      intronic
chr5:126305959(-) A-I      intronic
chr5:126280033(-) A-I      intronic
chr5:126327404(-) A-I      intronic
chr5:126305918(-) A-I      intronic
chr5:126328560(-) A-I      intronic
chr5:126290013(-) A-I      intronic
chr5:126279769(-) A-I      intronic
chr5:126304460(-) A-I      intronic
chr5:126316201(-) A-I      intronic
chr5:126315384(-) A-I      intronic
chr5:126290022(-) A-I      intronic
chr5:126292150(-) A-I      intronic
chr5:126207602(-) A-I      intronic
chr5:126305885(-) A-I      intronic
chr5:126336713(-) A-I      intronic
chr5:126280031(-) A-I      intronic
chr5:126316148(-) A-I      intronic
chr5:126210195(-) A-I      intronic
chr5:126292703(-) A-I      intronic
chr5:126341107(-) A-I      intronic
chr5:126221080(-) A-I      intronic
chr5:126341095(-) A-I      intronic
chr5:126212434(-) A-I      intronic
chr5:126305917(-) A-I      intronic
chr5:126292215(-) A-I      intronic

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
MARCHF3
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: MARCHF3

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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