Detail Information

Basic Information:


  VIRBase ID:  

HHID00072065

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           FAM117A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p FAM117A
miRBase
Accession/Entrez ID		 MIMAT0014983 81558
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FAM117A
chr17:47791896(-) A-I      intronic
chr17:47791879(-) A-I      intronic
chr17:47830322(-) A-I      intronic
chr17:47791876(-) A-I      intronic
chr17:47791913(-) A-I      intronic
chr17:47792203(-) A-I      intronic
chr17:47791916(-) A-I      intronic
chr17:47813653(-) A-I      intronic
chr17:47791070(-) A-I      intronic
chr17:47791141(-) A-I      intronic
chr17:47798205(-) A-I      intronic
chr17:47798241(-) A-I      intronic
chr17:47798245(-) A-I      intronic
chr17:47798247(-) A-I      intronic
chr17:47831867(-) A-I      intronic
chr17:47832144(-) A-I      intronic
chr17:47832218(-) A-I      intronic
chr17:47832256(-) A-I      intronic
chr17:47832288(-) A-I      intronic
chr17:47798290(-) A-I      intronic
chr17:47799337(-) A-I      intronic
chr17:47832340(-) A-I      intronic
chr17:47834166(-) A-I      intronic
chr17:47834168(-) A-I      intronic
chr17:47799349(-) A-I      intronic
chr17:47789262(-) A-I      intronic
chr17:47789263(-) A-I      intronic
chr17:47789327(-) A-I      intronic
chr17:47799378(-) A-I      intronic
chr17:47803643(-) A-I      intronic
chr17:47803723(-) A-I      intronic
chr17:47803787(-) A-I      intronic
chr17:47804095(-) A-I      intronic
chr17:47804220(-) A-I      intronic
chr17:47804335(-) A-I      intronic
chr17:47804658(-) A-I      intronic
chr17:47804661(-) A-I      intronic
chr17:47804670(-) A-I      intronic
chr17:47804743(-) A-I      intronic
chr17:47809648(-) A-I      intronic
chr17:47810832(-) A-I      intronic
chr17:47811306(-) A-I      intronic
chr17:47811448(-) A-I      intronic
chr17:47813691(-) A-I      intronic
chr17:47813692(-) A-I      intronic
chr17:47813695(-) A-I      intronic
chr17:47813844(-) A-I      intronic
chr17:47813849(-) A-I      intronic
chr17:47813853(-) A-I      intronic
chr17:47821837(-) A-I      intronic
chr17:47821883(-) A-I      intronic
chr17:47821954(-) A-I      intronic
chr17:47821955(-) A-I      intronic
chr17:47822319(-) A-I      intronic
chr17:47789386(-) A-I      intronic
chr17:47789408(-) A-I      intronic
chr17:47789432(-) A-I      intronic
chr17:47789464(-) A-I      intronic
chr17:47789469(-) A-I      intronic
chr17:47789470(-) A-I      intronic
chr17:47790347(-) A-I      intronic
chr17:47790358(-) A-I      intronic
chr17:47790929(-) A-I      intronic
chr17:47790936(-) A-I      intronic
chr17:47826709(-) A-I      intronic
chr17:47826815(-) A-I      intronic
chr17:47830293(-) A-I      intronic
chr17:47830294(-) A-I      intronic
chr17:47830298(-) A-I      intronic
chr17:47830403(-) A-I      intronic
chr17:47830497(-) A-I      intronic
chr17:47831009(-) A-I      intronic
chr17:47831100(-) A-I      intronic
chr17:47831799(-) A-I      intronic
chr17:47831846(-) A-I      intronic
chr17:47831847(-) A-I      intronic
chr17:47831850(-) A-I      intronic
chr17:47790945(-) A-I      intronic
chr17:47790966(-) A-I      intronic
chr17:47791029(-) A-I      intronic
chr17:47790331(-) A-I      intronic
chr17:47821881(-) A-I      intronic
chr17:47821836(-) A-I      intronic
chr17:47799379(-) A-I      intronic
chr17:47809210(-) A-I      intronic
chr17:47809685(-) A-I      intronic
chr17:47804688(-) A-I      intronic
chr17:47822173(-) A-I      intronic
chr17:47804563(-) A-I      intronic
chr17:47803777(-) A-I      intronic
chr17:47822324(-) A-I      intronic
chr17:47803739(-) A-I      intronic
chr17:47809645(-) A-I      intronic
chr17:47831099(-) A-I      intronic
chr17:47803712(-) A-I      intronic
chr17:47809761(-) A-I      intronic
chr17:47834227(-) A-I      intronic
chr17:47789315(-) A-I      intronic
chr17:47803642(-) A-I      intronic
chr17:47826817(-) A-I      intronic
chr17:47830341(-) A-I      intronic
chr17:47831805(-) A-I      intronic
chr17:47834156(-) A-I      intronic
chr17:47809766(-) A-I      intronic
chr17:47822276(-) A-I      intronic
chr17:47792204(-) A-I      intronic
chr17:47813099(-) A-I      intronic
chr17:47809374(-) A-I      intronic
chr17:47791878(-) A-I      intronic
chr17:47799288(-) A-I      intronic
chr17:47822210(-) A-I      intronic
chr17:47830259(-) A-I      intronic
chr17:47813108(-) A-I      intronic
chr17:47821957(-) A-I      intronic
chr17:47809684(-) A-I      intronic
chr17:47811897(-) A-I      intronic
chr17:47821710(-) A-I      intronic
chr17:47830286(-) A-I      intronic
chr17:47832126(-) A-I      intronic
chr17:47803863(-) A-I      intronic
chr17:47803713(-) A-I      intronic
chr17:47831795(-) A-I      intronic
chr17:47834115(-) A-I      intronic
chr17:47804687(-) A-I      intronic
chr17:47822191(-) A-I      intronic
chr17:47821833(-) A-I      intronic
chr17:47831063(-) A-I      intronic
chr17:47831070(-) A-I      intronic
chr17:47826683(-) A-I      intronic
chr17:47831775(-) A-I      intronic
chr17:47832156(-) A-I      intronic
chr17:47799425(-) A-I      intronic
chr17:47811832(-) A-I      intronic
chr17:47831939(-) A-I      intronic
chr17:47791792(-) A-I      intronic
chr17:47803833(-) A-I      intronic
chr17:47789506(-) A-I      intronic
chr17:47799353(-) A-I      intronic
chr17:47832300(-) A-I      intronic
chr17:47798348(-) A-I      intronic
chr17:47833911(-) A-I      intronic
chr17:47831895(-) A-I      intronic
chr17:47834134(-) A-I      intronic
chr17:47811315(-) A-I      intronic
chr17:47834191(-) A-I      intronic
chr17:47789392(-) A-I      intronic
chr17:47821932(-) A-I      intronic
chr17:47804684(-) A-I      intronic
chr17:47790961(-) A-I      intronic
chr17:47813100(-) A-I      intronic
chr17:47834169(-) A-I      intronic
chr17:47822172(-) A-I      intronic
chr17:47821972(-) A-I      intronic
chr17:47834021(-) A-I      intronic
chr17:47804739(-) A-I      intronic
chr17:47822368(-) A-I      intronic
chr17:47831102(-) A-I      intronic
chr17:47799423(-) A-I      intronic
chr17:47831938(-) A-I      intronic
chr17:47830353(-) A-I      intronic
chr17:47799339(-) A-I      intronic
chr17:47834106(-) A-I      intronic
chr17:47831763(-) A-I      intronic
chr17:47834095(-) A-I      intronic
chr17:47799417(-) A-I      intronic
chr17:47832361(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED FAM117A
chr17:47790331(-) A-I intron -    22327324
chr17:47813100(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FAM117A
chr17:47788084-47788085(-) m6A 3'UTR       27773535
chr17:47788210-47788211(-) m6A 3'UTR       24284625//27773535
chr17:47788352-47788353(-) m6A 3'UTR       27773535
chr17:47788767-47788768(-) m6A 3'UTR//CDS       27773535
chr17:47788869-47788870(-) m6A 3'UTR//CDS       27773535
chr17:47797712-47797713(-) m6A 5'UTR//CDS//exon       27371828
chr17:47799873-47799874(-) m6A 5'UTR//CDS//exon//intron       27371828
chr17:47842948-47842949(-) m6A exon//intron       25456834
chr17:47866240-47866241(-) m6A exon//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
FAM117A
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: FAM117A

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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